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16 protocols using ht 29

1

Colon Cancer Cell Lines: Characterization and Treatment

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The human colon cancer cell lines of HCT116, LoVo, HT29, and HCT15 were obtained from the Bioresource Collection and Research Center (Hsinchu, Taiwan). Cells were cultured in RPMI medium containing 7% heat-inactivated fetal bovine serum (Gibco, Carlsbad, CA, USA), 100 units (U)/mL penicillin, and 100 U/mL streptomycin (Gibco). Cell lines were authenticated through a short-tandem repeat-profiling analysis to ensure that no culture contamination had occurred. Verteporfin (VP), 5-fluorouracil (5-FU), and irinotecan (CPT11) were purchased from Selleckchem (Houston, TX, USA) and were dissolved in dimethyl sulfoxide (Sigma, St. Louis, MO, USA). Antibodies against PODXL, TAZ, and phospho-TAZ were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against vimentin, Twist, Slug, and GADPH were obtained from GeneTex (San Antonio, TX, USA). Antibody against phospho-LATS1 was purchased from Cell Signaling Technology (Danvers, MA, USA)
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Colorectal and Gastric Cancer Cell Lines

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The human colon cancer cell line HT-29 was purchased from the American Type Culture Collection (Manassas, VA, USA). Human colorectal carcinoma DLD-1 cells and HCT116 cells were purchased from Dainippon Sumimoto Pharma Co., Ltd. (Osaka, Japan). The 5FU-resistant cell line DLD-1/5FU was established using long-term culture in the presence of 5FU in vitro (23 (link)). The human gastric cancer cell line MKN45 was purchased from RIKEN BioResource Center Cell Bank (Tsukuba, Japan) (24 (link)).
The cell lines were cultured in RPMI-1640 medium (HT-29, DLD-1, DLD-1/5FU and MKN45) or Dulbecco's modified Eagle's medium (HCT116) supplemented with 10% fetal bovine serum (FBS) at 37°C in a humidified atmosphere containing 5% CO2. Culture media and FBS were obtained from Sigma-Aldrich; Merck KGaA (Darmstadt, Germany). The Kirsten rat sarcoma viral oncogene homolog (KRAS) mutation status of HT-29 and MKN45 was wild-type, whereas DLD-1 and HCT116 are KRAS mutants. The v-Raf murine sarcoma viral oncogene homolog B (BRAF) mutation status of DLD-1, HCT116 and MKN45 was wild-type, whereas HT-29 is a BRAF mutant. The p53 mutation status of DLD-1, HT-29 and MKN45 was wild-type, whereas HCT116 is a p53 mutant.
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Colorectal Cancer Tissue and Cell Line Protocol

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CRC specimens and adjacent normal mucosa were obtained from 43 patients who underwent a curative operation at Nihon University School of Medicine. The study was approved by the Institutional Review Board, and informed consent was obtained from all patients. All tumors were pathologically diagnosed CRC and staged according to the TMN staging system; two patients were Stage I, 17 were Stage II, 16 were Stage III, and eight were Stage IV. CRC cell lines (Caco2, colo205, HT29, HCT116) and a breast cancer cell line (MCF7) were obtained from the RIKEN BioResource Center (Tsukuba, Japan). CRC cell lines were grown in RPMI1640 containing 10% fetal bovine serum, and MCF7 cells were grown in DMEM containing 5% fetal bovine serum. Cultures were maintained in a humidified atmosphere with 5% CO 2 at 37°C.
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Culturing CRC Cell Lines Caco-2 and HT-29

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Human CRC cell lines Caco-2 and HT-29 (Bioresource Collection and Research Center, HsinChu, Taiwan) were grown in Dulbecco’s modified Eagle’s medium (Gibco BRL, Grand Island, NY, USA) containing 2 mM L-glutamine and 1.5 g/L sodium bicarbonate, supplemented with 10% FBS and 2% penicillin–streptomycin (10,000 U/mL penicillin and 10 mg/mL streptomycin). The cells were cultured in a humidified incubator at 37 °C with 5% CO2.
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5

Generation and Validation of SLPI-Deficient Cells

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HT-29 and Ca9-22 cells were purchased from RIKEN BRC (Tsukuba, Japan). The cells were cultured in minimal essential medium (Wako, Tokyo, Japan) supplemented with 1% penicillin-streptomycin (Wako) and 10% fetal bovine serum (Japan Bio Serum, Tokyo, Japan) at 37°C under 5% CO 2 . ΔSLPI Ca9-22 cells were generated as described previously (18) . Briefly, the fragment containing SLPI was amplified by PCR using genomic DNA from wild-type Ca9-22 (wtCa9-22) cells. For the SLPI-disruption construct, the neomycin resistance gene under control of the TK promoter was inserted between NdeI sites in the SLPI fragment. In total, 1 × 10 7 Ca9-22 cells were transfected with the plasmid containing the SLPI-disruption construct. After transfection, the cells were selected on a medium containing G418 (Sigma-Aldrich, St. Louis, MO, USA).
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6

Colorectal Cancer Cell Line Culture

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Five human colorectal cancer cell lines (HCT116, HT29, SW480, Caco-2, and Colo205) were obtained from the Bioresource Collection and Research Center (Hsinchu, Taiwan). Dulbecco’s Modified Eagle’s Medium containing 10% foetal bovine serum, 100 U/ml penicillin and 0.1 mg/ml streptomycin served as the cell culture medium throughout all experiments. The cells were maintained at 37 °C in a humidified atmosphere of 5% CO2 in air and passaged every 2 days to obtain exponential growth. All five cell lines were maintained in culture no more than 15 passages. All culture reagents were sourced from Gibco (Invitrogen, Carlsbad, CA, USA).
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7

Characterization of Colorectal Cancer Cell Lines

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There were 4 cell lines used in this study including SW480, SW620, HCT 116, and HT-29 cells (Bioresource Collection and Research Center, Hsinchu, Taiwan). SW480 and SW620 cells were established from a same Caucasian male patient with colon adenocarcinoma, and SW480 was isolated from the primary colon tumor site, SW620 was isolated from a lymph node metastasis site. SW480, but not HT-29, secrets granulocyte-macrophage colony-stimulating factor (GM-CSF) that stimulates the proliferation of acute megakaryoblastic leukemia M-07e [21 (link)]. SW480 and SW620 synthesize small quantities of carcinoembryonic antigen (CEA) and belong to Broders' grade 4 cancer [22 (link)]. By Northern blot analysis, the oncogenes c‐myc, H‐ras, K‐ras, N‐ras, myb, fos, and p53 were all expressed in SW480 and SW620 cells [23 (link)]. HT-29 cells were isolated from a Caucasian female patient with colorectal adenocarcinoma (ATCC data). HT-29 and SW480, but not SW620, express vitamin D receptor whose activation by 1,25-dihydroxyvitamin D inhibits cell proliferation and clonogenic growth in soft agar [24 (link)]. HT 116 has a mutation in codon 13 of the ras protooncogene and expresses transforming growth factor beta 1 and beta 2. SW480 and SW620 cells are cultured in Leibovitz's L-15 medium with 10% FBS, and HT-29 and HCT 116 cells are cultured in McCoy's 5a medium with 10% FBS.
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8

Cell Culture Conditions for Cell Lines

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HT-29 (human colon cancer cell line, BCRC 60157), SV-HUC-1 (human normal uroepithelial cells, BCRC 60358), and HEK 293 (human normal embryonic kidney cells, BCRC 60019) were purchased from the Bioresource Collection and Research Center (BCRC) (Hsinchu, Taiwan), and BEAS-2B (human bronchial epithelial cells, ATCC CRL-9609) was obtained from the American Type Culture Collection (ATCC) (Manassas, VA, USA). HT-29 was cultured in RPMI 1640 medium, and SV-HUC-1, HEK 293, and BEAS-2B were maintained in DMEM medium. All culture media were supplemented with FBS (10%) and penicillin-streptomycin (100 units/mL and 100 µg/mL, respectively). All cells were cultured at 37 • C in a humidified atmosphere containing 5% CO 2 and 95% air. The cells were passaged every 2-3 days with 0.05% trypsin and were sub-cultured at an initial density of 1 × 10 5 cells/mL per 10-cm tissue dish.
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9

Colorectal Cancer Cell Line Cultivation

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The CRC cell lines SW1116, SW480, SW620, DLD1, HT29, and CaCO2 were purchased from the Bioresource Collection and Research Center (BCRC; Hsinchu, Taiwan). SW1116, SW480 and SW620 cells were cultured in Leibovitz L-15 Medium (Life Technologies, Grand Island, NY, USA). HT29 and DLD1 cells were cultured in high-glucose Dulbecco’s modified Eagle’s medium (Invitrogen, Carlsbad, CA, USA). CaCO2 cells were cultured in Eagle’s minimum essential medium (Invitrogen). Wild type HCT116 (p53+/+) cells and isogenic p53 null cells (HCT116 (p53−/−)) were purchased from Horizon Discovery Group (Cambridge, UK) [60 (link)] and cultured in RPMI 1640 medium (Invitrogen). All media were supplemented with 10% fetal bovine serum (FBS; Invitrogen) and antibiotics (100 U mL-l penicillin and 100 mg mL-l streptomycin) according to the manufacturer’s instructions.
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10

Cell Line Culture and Reagent Preparation

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Human colorectal carcinoma cell lines HCT-116 and HT-29, and mouse colon carcinoma cell line CT-26 were purchased from Bioresource Collection and Research Center (BCRC, Hsinchu, Taiwan). HCT-116 and HT-29 cells were grown in McCoy’s 5A (Sigma-Aldrich, Darmstadt, Germany) and CT-26 was grown in RPMI-1640 (Gibco, Dublin, Ireland) supplemented with 4.5 g/L glucose, 10 mM HEPES, and 1.0 mM sodium pyruvate. All cells were maintained in humidified air containing 5% CO2 incubator at 37 °C and cultured every 2–3 days.
EGFL6 recombinant protein was purchased from Sino Biological (Beijing, China). EGFL6 therapeutic antibody (EGFL6-E5-IgG) was generated and provided by Dr. Yu-Ching Lee using phage display technology. Bevacizumab (Avastin®) was purchased from Genentech (California, USA). 5-FU (Fluorouracil® Injection) was purchased from Pfizer (New York City, USA).
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