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23 protocols using ab49254

1

Protein Expression Analysis by SDS-PAGE

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Proteins were extracted and separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), then transferred to polyvinylidene fluoride (PVDF) membranes (Merck Millipore, Burlington, MA, USA). After blocking with 1% bovine serum albumin (BSA), the membranes were incubated overnight at 4°C with primary antibodies to FOXJ3 (ab183112; Abcam, Cambridge, MA, USA), Twist (ab49254; Abcam, Cambridge, MA, USA), MMP-2, MMP-9, caspase-3, and Bax (10373-2-AP; 27306-1-AP; 19677-1-AP; 50599-2-Ig) (Proteintech, Manchester, UK), and then incubated with secondary antibody (Proteintech, Manchester, UK). GAPDH was used as a control (10494-1-AP) (Proteintech, Manchester, UK).
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2

Western Blot Analysis of Twist1 and Slug

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The Western blot analysis was performed as previously described [35 (link)]. The rabbit polyclonal antibodies against Twist1 (ab49254, Abcam, Cambridge, MA, USA) and Slug (PA5-20290, Thermo Fisher Scientific, Waltham, MA, USA) were used in 1:1000 and 1:500 dilution, respectively. The mouse monoclonal antibody against GAPDH (MAB374, Merck Millipore, Burlington, MA, USA) was utilized in 20000-folds dilution. Quantification of the expression levels was achieved by the use of the Image J software to measure the densitometry followed by normalization using the GAPDH level.
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3

Western Blot Analysis of EMT Markers

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Cells (HPDE6-C7, CaPAN-1, BxPC-3, PANC-1, and AsPC1) were lysed via RIPA buffer (Beyotime, Shanghai, China) and protein was collected. Concentrations of total protein were quantified through a BCA Protein Assay Kit (Sigma-Aldrich). Equal amounts of each sample were separated via 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transmembrane to polyvinylidene fluoride (PVDF) membranes (Merck, Darmstadt, Germany). Immediately, the membranes were incubated with primary antibodies overnight at 4°C, which were FBXL7 (ab59149, Abcam; 1.25 μg/ml), E-Cadherin (ab231303, Abcam; 1 μg/ml), N-cadherin (ab18203, Abcam; 1 μg/ml), Vimentin (ab137321, Abcam; 1:3,000), Snail 1 (ab53519, Abcam; 3 μg/ml), Snail 2 (ab82846, Abcam; 1:500), ZEB 1 (ab155249, Abcam; 1:3,000), Twist (ab49254, Abcam; 2.5 μg/ml), and GAPDH (ab181602, Abcam; 1:10,000). Goat anti-Human IgG/HRP (Solarbio, SE101) was employed as secondary antibody to incubate the membranes. Finally, Positive signals were detected with an ECL luminescence reagent (Sangon Biotech, Shanghai, China).
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4

Western Blot Analysis of Protein Expression

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RKO cells were harvested and their proteins were extracted by using lysis buffer.
The primary antibodies against CEMIP (DF12056, Rabbit polyclonal antibody;
Affinity Biosciences), GAPDH (ab128915; Abcam, Cambridge, MA, USA), c-Myc
(ab39688; Abcam), E-cadherin (ab1416; Abcam), and Twist-1 (ab49254; Abcam) were
diluted at a ratio of 1:1000, and the second antibody goat anti-Rabbit IgG
H&L (HRP; ab6721; Abcam) was diluted at a ratio of 1:10,000 according to the
instructions. The detailed process for Western blot analysis was conducted as
previously described.15 (link)
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5

Western Blot Analysis of Cell Signaling

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Cells were washed with PBS and lysed with SDS lysis buffer. Frozen tissues were lysed using T-PER Tissue Protein Extraction Reagent (Thermo Fisher Scientific). Protein concentrations were determined using the Bradford assay (Bio-Rad). Equal amounts of protein from each sample were resolved by SDS-PAGE and transferred onto PVDF membranes (Millipore). Immunoblots were blocked by incubation in 5% skim milk in TBS-T (0.1% Tween 20) for 1 h at 25 °C. Membranes were incubated with the following primary antibodies: anti-TINAGL1 (1:1000; 12077-1-AP, Proteintech), anti-pFAK (1:1000; #3283; Cell Signaling Technology), anti-FAK (1:1000; #3285; Cell Signaling Technology), β-actin (1:10,000; sc-47778, Santa Cruz Biotechnology), anti-Twist (1:1000; ab49254, Abcam), anti-E-cadherin (1:500; #13-1700; Invitrogen), anti-N-cadherin (1:1000, ab18203, Abcam), anti-integrin β1 (1:1000; ab30394, Abcam), anti-integrin αv (1:1000; #4711, Cell Signaling Technology), anti-integrin α5 (1:1000; #4705, Cell Signaling Technology), and anti-GAPDH antibodies (1:20,000; Abc-1001, AbClon), followed by their corresponding HRP-conjugated secondary antibodies, anti-mouse (1:5000: #115-035-003, Jackson ImmunoResearch Labs) and anti-rabbit antibodies (1:4000; #Abc-5003, AbClon). Proteins were detected using AbSignal (Abclone).
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Immunoblotting analysis of circadian proteins

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Immunoblots were performed with samples containing total protein (40 μg) and 12% NuPage Bis-Tris or 7% Tris-Acetat polyacrylamide gels (LifeTechnologies). The membranes were probed with rabbit polyclonal anti-PER1 (1:500; Abcam ab136451), rabbit polyclonal anti PER2 (1:250; ab180655), rabbit monoclonal anti-PER3 (1:2500; ab177482), rabbit polyclonal anti-DBP (1:400; ab22824), rabbit polyclonal anti-Twist1 (1:400; ab49254) and rabbit polyclonal anti-TWIST2 antibodies (1μg/ml; ab66031). The secondary antibody was a horseradish peroxidase-linked goat anti-rabbit IgG (various concentrations; ab97051), and it was detected by the chemiluminescence technique using the Immobilon Western ECL system (Millipore). For a loading control, we used a mouse monoclonal anti-p84 antibody (nuclear matrix protein 84; 1:2000; Abcam ab487). The secondary antibody was a horseradish peroxidase-linked goat anti-mouse IgG (1:5000; Abcam; ab20043). Densitometric analysis was performed using the ImageJ software and the intensity of the control lanes were set as 1.
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7

Protein Expression Analysis in Gastric Cancer

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We extracted total proteins from human GC tissues and cell lines using the RIPA lysis buffer (AS1004, ASPEN, Wuhan). Then, equal amounts of the protein lysates were separated on a 10% SDS PAGE. The resolved proteins were transferred onto PVDF membranes (IPVH00010, Millipore) and blocked with 5% non-fat milk in TBST for 2 h at room temperature. Then, the membrane was incubated overnight at 4°C with the following primary antibodies: anti- SERPINH1 (ab109117, Abcam), anti-Wnt2 (sc-514382, SANTA CRUZ), anti-β-Catenin (17565-1-AP, SanYing, Wuhan), anti-p-GSK3β (#5558, CST), anti-GSK3β (#12456, CST), anti-NFκB p65 (#8242, CST), anti-Snail1 (13099-1-AP, SanYing, Wuhan), anti-Slug (ab106077, Abcam), anti-TWIST (ab49254, Abcam), anti-MMP2(ab37150, Abcam), anti-MMP9 (ab76003, Abcam), anti-E-Cadherin (#3195, CST), anti-N-Cadherin (#4061, CST). Subsequently, the membranes were incubated with the horseradish peroxidase (HRP)-conjugated secondary antibody (AS1107, ASPEN). The blots were developed using the enhanced chemiluminescence system (AS1059, ASPEN) and the protein bands were imaged.
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8

Metastasis Model of Nude Mice

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Animal experiments were performed following the guidelines of the Institutional Animal Care and Use Ethics Committee of the First People’s Hospital of Foshan, Guangdong Province, China. Eight-week-old female BALB/c nude mice were purchased from the Medical Experimental Animal Center of Guangdong Province (Guangzhou, China). To create a mice metastasis model, SUNE1 cells (200 μL PBS containing 1×106 SUNE-1 cells) stably expressing shYAP1 or control shRNA (with or without HBx DNA plasmid, respectively) was injected into mice tail vein (n=6 per group). Six weeks later, mice were euthanized, and then their lungs were collected. All lung samples were then paraffin-embedded, sectioned and stained for morphology, and also anti-Snail (#sc271977, 1:100 dilution, Santa Cruz Biotechnology, USA), anti E-Cadherin (#14472,1:200 dilution, Cell Signaling Technology, USA), anti-Vimentin (#5741,1:200 dilution, Cell Signaling Technology, USA), anti-TWIST (#ab49254, 1:80 dilution, Abcam, MA, USA) and anti-HBx (#sc373980, 1:50 dilution, Santa Cruz Biotechnology, USA) immunohistochemistry staining was performed in these samples.
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9

Western Blot Analysis of EMT Markers

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Whole cell protein (25~60 μg) extracted by RIPA lysis buffer from each sample was loaded into 8% or 10% polyacrylamide gel for electrophoresis as previously described (Cheng et al., 2018 (link)) followed by membrane transfer carried out at 300 mA for 1.5~2.5 h. Membranes were blocked with 5% non-fat milk in Tris-buffered saline solution (pH 7.4) containing 0.05% Tween-20 and incubated with primary antibodies overnight. The following primary antibodies were used. β-actin (20536-1-AP, Proteintech, China), E-cadherin (24E10, CST, USA), N-cadherin (ab18203, abcam, USA), Estrogen receptor α (ab32063, abcam, USA), Twist (ab49254, abcam, USA), and Snail (L70G2, CST, USA). After incubation with secondary antibodies (A0208, Beyotime, China), the membranes were treated with reagents from the ECL kits (P90719, Millipore, USA) and exposed to X-ray film (Kodak, USA) in darkness.
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10

Western Blotting and Immunofluorescence Staining Protocols

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Western blotting staining and immunohistochemical (fluorescence) staining were performed as described previously 17, 19. The primary antibodies used in this study were Snail (1:1,000 dilution; MABE167; Merck, Darmstadt, Germany), E‐cadherin (1:1,000 dilution; #3195S; Cell Signaling Technology), PCAF (1:1,000 dilution; #3378S; Cell Signaling Technology), vimentin (1:2,000 dilution; GTX100619; GeneTex), β‐actin (1:10,000 dilution; #4967L; Cell Signaling Technology), HA (1:1,000 dilution; #3724S; Cell Signaling Technology), GFP (1:500 dilution; SC‐9996; Santa Cruz Biotechnology), ISX (1:200 dilution; sc‐398934; Santa Cruz Biotechnology), TWIST1 (1:200 dilution; ab49254; Abcam), BRD4 (1:1,000 dilution; #13440S; Cell Signaling Technology), acetylated lysine (1:500 dilution; #9441S Cell Signaling Technology), fibronectin (1:500 dilution; GTX112794; GeneTex), mCherry (1:500 dilution; GTX128508; GeneTex), Slug (1:1,000 dilution; GTX128796; GeneTex), VEGF (1:200 dilution; sc‐7269; Santa Cruz Biotechnology), and N‐cadherin (1:1,000 dilution; GTX127345; GeneTex). FITC‐conjugated anti‐rabbit IgG, rhodamine‐conjugated anti‐mouse IgG, and alkaline phosphatase‐conjugated anti‐rabbit IgG antibody (1:500 dilution; Jackson ImmunoResearch Laboratories, West Grove, PA, USA) were also used. All experiments were repeated at least three times.
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