The largest database of trusted experimental protocols

9 protocols using 4 6 diamino 2 phenylindole

1

Immunofluorescent Staining of Intestinal Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Monolayers and enteroids were fixed in 4% paraformaldehyde embedded in paraffin, sectioned, and directly stained according to standard procedures, as previously described.34 (link) The following antibodies were used: anti-mucin2, Sc-15334 (Santa Cruz Biotechnology, Santa Cruz, CA), dilution 1:200; anti-TJP1, 339100 (ThermoFisher Scientific), dilution 1:100; anti-villin, 610359 (BD Biosciences, San Jose, CA), dilution 1:50; anti-sucrase isomaltase, Sc-27603 (Santa Cruz Biotechnology), dilution 1:200; and anti–epithelial cell adhesion molecule, MA5-12436 (Life Technologies, MA), dilution 1:100. Ulex europaeus agglutinin 1 conjugated with FITC (ulex europaeus agglutinin 1–FITC) was used to detect M-cells (bright)35 (link) and enterocytes (low)36 (link) (50 μg/mL) (Sigma-Aldrich). 4’-6’-diamino-2phenylindole (Sigma-Aldrich), was used for nuclei counterstaining at 1 μg/mL. The images were acquired using an Eclipse confocal microscope (Nikon, Melville, NY) and composed using Adobe Photoshop CS6 software.
+ Open protocol
+ Expand
2

Effects of ACS14 and Aspirin on HUVEC

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human umbilical vein endothelial cells (HUVECs) were obtained from newborn umbilical cord (West China Hospital of Sichuan University, Chengdu, China) for research only with the consent by the puerpera, and RAW264.7 cells were sub-cultured at 37o C with 5% CO2 for no more than seven passages until a flask was 80% covered. ECs were cultured in DMEM/F12 (Hyclone, Logan, UT, USA) and 10% fetal bovine serum (Hyclone); macrophages were in DMEM High Glucose (Hyclone) and 5% fetal bovine serum (Hyclone). Media was refreshed in advance for subsequent use. Endothelial cells were digested by 0.25% typsin firstly, 1 mL cells of 1 × 104 cells/mL were seeded and cultured with 1, 5, 10 μM ACS14, 10 μM aspirin (ASA) (Sigma), 10 μM dimethyl sulfoxide (DMSO), on 24-well plate for 1- and 3-day culture at 37o C with 5% CO2. ACS14 was dissolved in DMSO. Cell counting kit-8 kit (Sigma) was used to test cell viability assay at 450 nm, and phalloidin (Sigma) and 4,6-diamino-2-phenylindole (Sigma) was used for staining. Images were taken by Fluorescence microscopy (Olympus IX51, Tokyo, Japan).31 (link)32 (link)
+ Open protocol
+ Expand
3

Organoid Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Organoids were extracted with RIPA buffer (Nacalai Tesque) and used for immunoblotting analysis. The membranes were incubated with antibodies against Epcam (1:1000 dilution), claudin-7 (1:1000 dilution), claudin-2 (1:1000 dilution), E-cadherin (1:1000 dilution), and β-actin (1:1000 dilution) at 4 °C overnight. To detect ZO-1, immunofluorescence staining was performed as described previously31 (link). Briefly, organoids were fixed with 4% paraformaldehyde in PBS for 15 min, followed by blocking for 30 min with 5% normal goat serum (Dako) at RT. Then the organoids were incubated with anti-ZO-1 pAb (1:25 dilution) for 16 h at 4 °C. After washing, the cells were incubated for 30 min at RT with Alexa Fluor 488-conjugated goat anti-rabbit IgG (Invitrogen). Then, the organoids were counterstained with 4,’6-diamino-2-phenylindole (Sigma), and examined with an Axio Imager A2 (Carl Zeiss MicroImaging, Tokyo, Japan). To validate Epcam and claudin-7 mRNA expression, RT-PCR was performed using total RNA extracted from organoids. Primer sequences are shown in Supplementary Table 2. Full size immunoblots and gels for all experiments are shown in Supplementary Fig. 6.
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of STING in Murine Eyes

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemical staining, normal and 3-day infected eyes from C57BL/6 and BALB/c mice were enucleated (n = 3/group/time), immersed using ice-cold PBS, embedded in Tissue-Tek OCT compound (Miles, Elkhart, IN, USA), and frozen in liquid nitrogen. Immunohistochemical staining was performed with the UltraSensitive SP Immunodetection Kit (Maixin, Inc., Fuzhou, China) following the manufacturer’s protocol. Primary antibodies (rabbit anti-mouse STING) were purchased from PeproTech (Rocky Hill, NJ, USA). Controls were similarly treated, but the primary antibody was replaced with isotype-matched goat IgG. For immunofluorescent staining, cells were seeded on sterile glass cover slips, cultured overnight, and then fixed with 4% paraform (Sigma) in 4°C. Slips were sequentially incubated with rabbit anti-mouse STING Ab (1:200, PeproTech), rabbit anti-mouse NF-κB (1:200, Cell signaling), and Alexa Fluor 488-conjugated goat anti-rabbit IgG Ab (1:1,000, Millipore, Billerica, MA, USA), followed by incubation with 4,6-diamino-2-phenyl indole (1:10,000, Sigma) for nuclear staining. Controls were similarly treated, but the primary Ab was replaced with isotype-matched IgG. For histopathology, sections were HE stained as described by others (29 (link)). All sections were visualized with a Carl Zeiss microscope (Carl Zeiss, Inc., Oberkochen, Germany).
+ Open protocol
+ Expand
5

Molecular Signaling Reagents Database

Check if the same lab product or an alternative is used in the 5 most similar protocols
GnRH analog (GnRH-a), Tetradecanoylphorbol acetate (TPA), Okadaic Acid, Polyethylenimine (PEI), 4′6-diamino-2-phenylindole (DAPI) and PLA kit were obtained from Sigma (Rehovot, Israel). GF109203x was obtained from Calbiochem (Darmstadt, Germany). Protein A/G beads were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Dharmafect was obtained from Thermo Scientific (Lafayette, CO, USA). 8-iso PGF2 α was purchased from Cayman Chemical (Ann Arbor, MI, USA). Monoclonal anti-PP2A Ab was obtained from BD Transduction Laboratories (New Jersey, USA). Anti-IGBP1 and monoclonal anti-PI3K Abs were obtained from Abcam (Cambridge, UK). Anti-GFP and anti-HA Abs were obtained from Roche Diagnostics (Mannheim, Germany). Monoclonal anti-AKT, Tubulin, GAPDH, and PKC α were obtained from Santa Cruz Biotechnology (CA, USA). Abs to phosphorylated JNK (pJNK), general JNK1/2 (gJNK), general AKT (gAKT) and histone H1 were from Sigma (Rehovot, Israel). Anti-phospho AKT (pS473AKT) was obtained from Cell Signaling Technology (Boston, MA, USA). Anti-PI3K was purchased from Upstate (Lake Placid, NY New York), or Millipore (Billerica, MA). The anti-phosphorylated PI3K (P85-S608) Abs was prepared by the Ab unit of the Weizmann Institute of Science (Rehovot Israel as previously described [50 (link), 51 (link)]). Secondary Ab conjugates were from Jackson Immunoresearch (West Grove, PA, USA).
+ Open protocol
+ Expand
6

Subcellular Localization of MEG3 in Mouse Endothelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
According to the instructions of the FISH kit (Roche, Basel, Swiss), the location of MEG3 subcellular was detected. Initially, the mouse endothelial cells were fixed with 4% polyformaldehyde and then cultured in medium containing digoxin labeled MEG3 probes (Sigma Aldrich, St. Louis, Mo, USA). Next, the cells were stained with 4', 6-diamino-2-phenylindole (Sigma Aldrich, St. Louis, Mo, USA) at room temperature for 10 min and photographed under a laser confocal microscope (FV1000, Olympus, Tokyo, Japan) to obtain the fluorescence images.
+ Open protocol
+ Expand
7

Skin Cell Types Expressing MC1R

Check if the same lab product or an alternative is used in the 5 most similar protocols
To identify the cell types in the skin that were positive for MC1R, double staining for cell types of interest was performed on nine or ten samples randomly selected from those positive for single MC1R staining. The anti-MC1R monoclonal antibody was reacted in the same manner as described above. Alexa Fluor 488-labeled donkey anti-rabbit secondary antibody (Life Technologies, Carlsbad, CA, USA) was used as the secondary antibody. Subsequently, double staining was performed using the following antibodies against cell-specific markers: anti-prolyl-4-hydroxylase β antibodies (1:50, Acris Antibodies, Herford, Germany) for fibroblasts, anti-CD68 antibodies (1:200, Biolegend, San Diego, CA) for monocytes/macrophages, anti-CD66b antibodies (1:250, Biolegend) for neutrophils, and anti-CD31 antibodies (1:50, R&D Systems) for endothelial cells. Antibodies labeled with Alexa Fluor 594 (Invitrogen, Carlsbad, CA, USA) were used as secondary antibodies. For nuclear counterstaining, 4′,6′-diamino-2-phenylindole (Sigma-Aldrich) was used. Immunofluorescence-stained tissue sections were analyzed using a Nikon Eclipse 80i microscope (Nikon, Tokyo, Japan).
+ Open protocol
+ Expand
8

Immunohistochemical analysis of SELENOT and TH

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fixed tissues were sectioned in sagittal orientation into 10-12μm slices with a cryostat. The sections were post-fixed 30 min in PFA 4% then washed three times with PBS. Samples were incubated with 1% donkey serum diluted in 1% bovine serum albumin and 0.3% Triton X-100 in PBS for 2 h at room temperature and exposed overnight at 4°C to primary antibodies, including rabbit anti-SELENOT diluted 1:200 [27] and sheep anti-TH diluted 1:5,000. Sheep anti-TH antibodies were raised against rat TH purified from rat pheochromocytoma cells according to a protocol previously described [28] . This antibody reproduced neuronal TH immunostainings previously described in the literature. Immunostaining was visualized using Alexa 594-conjugated secondary anti-rabbit antibodies diluted 1:200 (Invitrogen, Saint Aubin, France) or Alexa 647-conjugated secondary anti-sheep antibodies diluted 1:200 (Interchim, Montluçon, France). Nuclei were stained with 1 μg/mL 4,6-diamino-2-phenylindole diluted 1:1,000 (DAPI; Sigma-Aldrich) in PBS prior to mounting the slides with PBS/glycerol 50/50.
+ Open protocol
+ Expand
9

Cell Cycle Analysis by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultured cells were fixed with Cytofix/Cytoperm (BD Biosciences) for 30 min at 4°C, followed by washing twice with Perm/Wash (BD Biosciences) buffer. After washing, cells were stained with phycoerythrin (PE)-conjugated anti-Ki67 antibody (BD Biosciences) and 4,6-diamino-2-phenylindole (0.5 μg/mL; Sigma-Aldrich). Cellcycle status was determined using 4,6-diamino-2-phenylindole versus Ki-67 on FACSAria SORP (BD Biosciences), and the amount of cells in G 0 /G 1 and S-phase was calculated using FlowJo software (TreeStar, Ashland, OR).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!