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5 protocols using anti α synuclein antibody

1

Neuronal Differentiation and Neuroprotection

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DMEM/F12 and B27™ culture media were bought from GIBCO® (U.S.A.) and trypsin (no. 0458) was bought from Amresco (U.S.A.). Poly-l-lysine (PLL), laminin and nerve growth factor (NGF) were purchased form Sigma (St. Louis, MO). Harpagide was obtained from Hubei Jusheng Technology Co., Ltd (Wuhan, China). Anti-α-synuclein antibody, anti-α-synuclein (phospho S129) antibody and anti-synaptophysin antibody were purchased from Abcam (U.K.). Anti-tyrosine hydroxylase (TH) was purchased from and the fluorescent secondary antibodies were purchased from Wuhan Boster Corp (China). Reactive oxygen species (ROS) assay kit and cell counting kit-8 (CCK-8) assay were purchased from Beyotime Biotechnology Ltd. (China) and Dojindo Laboratories (Japan), respectively. All other chemicals unless specified were reagent grade and were used without further purification.
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2

Protein Extraction and Western Blot Analysis

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Total proteins were extracted from the cell lysates using RIPA lysis buffer supplemented with a protease inhibitor cocktail (Sigma-Aldrich, St. Louis, MO, USA, 1:50 dilution). Protein concentrations of the extracts were measured with a BCA assay kit. For Western blot, samples were mixed with sodium dodecyl sulfate (SDS) loading buffer and separated on 8%,10%, 12%, or 15% SDS-polyacrylamide gel electrophoresis (PAGE). Proteins were electrophoretically transferred to a polyvinylidene difluoride (PVDF) membrane and blocked with 5% milk dissolved in Tris-buffered saline containing 0.1% Tween 20 (TBST) for 1 h at room temperature. The membranes were probed overnight at 4 °C with the following primary antibodies: anti-α-synuclein antibody (Abcam, Cambridge, UK, ab138501, 1:1000 dilution); anti- p62 antibody (Abcam, ab91526, 1:1000 dilution); anti-LC3B antibody (Novus, St. Charles, MO, USA, NB100-2220, 1:1000 dilution); anti-HDAC4 antibody (Proteintech, Wuhan, China, 17449-1-AP, 1:600 dilution); anti-β-actin antibody (Antgene, Wuhan, China, ANT009, 1:1000 dilution). After incubation with horseradish peroxidase-conjugated secondary antibodies (1:1000 dilution) for 1 h at room temperature, western blots were revealed through chemiluminescence. The protein levels were quantified through densitometry using ImageJ v1.47 software.
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3

Immunofluorescence Analysis of LC3 and α-Synuclein

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Details are discussed in previously published literature [7 (link)]. Briefly, PC12 cells were plated on noncoated 12 mm coverslips and treated with MPP+ (0.5 mMol/L, 24 h exposure) and Paeoniflorin (50 uM, 24 h) and then fixed in ice-cold 4% paraformaldehyde for 15 min. The cells were then exposed to primary anti-LC3 antibody (1 : 250, Abcam, Cambridge, UK) or anti-α-synuclein antibody (1 : 250, Abcam, Cambridge, UK) for 1.5 h at 37°C. After appropriate secondary antibody (1 : 500, Cy3-labeled Goat Anti-Rabbit for anti-LC3, FITC-labeled Goat Anti-Mouse IgG for anti-α-synuclein, Beyotime Institute of Biotechnology, Jiangsu, China) treatment for 1 h, the labeled cells were stained with 4′,6-diamidino-2-phenylindole (DAPI, 0.3 μg/mL) for 15 min and evaluated by a Laser Scanning Confocal Microscope (Leica TCS SP2 CLSM). Images were collected and processed using the imaging software provided by the Leica TCS system.
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4

Nanoplastic Effects on α-Synuclein Fibrils

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Pre-formed α-synuclein fibril seeds (125 nM) were prepared in the absence or presence of nanoplastic particles at the indicated concentration and incubated at ~25°C for 30 min. Equal amounts of proteinase K (20 nM, Thermofisher Sci, Cat# 25530015) were added to each reaction that were incubated at 37°C for 10 min. Reactions were quenched through the addition of a 2x Laemmli buffer and boiling at 95°C for 10 min. Reactions were analyzed for remaining α-synuclein reactivity >17 kDa as resolved by SDS-PAGE. Proteins were transferred to 0.22 μm nitrocellulose membranes and immunoblotting was performed using anti-α-synuclein antibody (Abcam, Cat# ab138501).
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5

Investigating α-Synuclein Interactions in Neurodegenerative Diseases

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Frozen substantia nigra tissue was selected from the same Control (N = 3), PSP (N = 3) and PD (N = 3) cases used for OPAL multiplex immunofluorescence. Protein lysates were generated using cell lysis buffer (NEB) and brief sonication on ice, followed by centrifugation to pellet insoluble material. Co-immunoprecipitation was carried out using the Dynabeads Protein G immunoprecipitation kit (ThermoFisher Scientific), with an anti-α-synuclein antibody (Abcam) as bait. Proteins bound to beads were eluted and assayed by western blot (as described above) and probed with an anti-LRRC37A antibody (ThermoFisher Scientific). Whole protein lysate and IgG only controls were run on the same blots.
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