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Rnazol b

Manufactured by Tel-Test
Sourced in United States

RNAzol B is a reagent used for the isolation and purification of RNA from various biological samples. It is a single-step, phenol-based method that effectively separates RNA from DNA, proteins, and other cellular components.

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25 protocols using rnazol b

1

Western Blotting Reagents and Antibodies

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Western blotting reagents were purchased from Amersham (Bucks, UK). RNAzol™ B was obtained from TEL-TEST, Inc. (Friendwood, TX, USA). Antibodies against β-actin, Histone H1, p-IRS (ser), p-IRS (tyr), p-Akt, total-Akt, p-C-Jun, C-Jun, and COX-2 were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against FoxO6 and p-FoxO6 (Ser184) were obtained from Dr. H. H. Dong (University of Pittsburgh, PA). Anti-rabbit IgG-horseradish peroxidase-conjugated antibody and anti-mouse IgG-horseradish peroxidase-conjugated antibody were obtained from Amersham (Bucks, UK). Horseradish peroxidase-conjugated donkey anti-sheep/goat IgG was purchased from Serotec (Oxford, UK). Polyvinylidene difluoride (PVDF) membranes were obtained from the Millipore Corporation (Bedford, MA, USA).
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2

Quantifying Cytokines and Viral Transmission

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Total cellular RNA from cells or homogenized tissues was isolated by RNAzol B (TEL‐TEST, INC) using the manufacturers protocol, and GAPDH was used as a housekeeping gene. The level of pro‐inflammatory cytokines, IL‐1β, IL‐6, IL‐8, and TNF‐α messenger RNA (mRNA), was measured in the NG or control media exposed tissues/cells using RT‐PCR with gene‐specific primers/probes by real‐time RT‐PCR using primers and probes as described as described previously.38 Secreted cytokines in culture supernatant were measured by MSD multiplex assay according to the manufacturers protocol (MESO SCALE DISCOVERY, Rockville, MD 20850 USA). To measure the transmission of virus across tissues, HIV‐Gag38 mRNAs were measured in the HIV‐1‐exposed tissues by RT‐PCR and HIV p24 was measured in the supernatants using a commercially available HIV‐1 p24 ELISA kit according to manufacturers protocol (SAIC‐Fredrick, MD).
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3

Quantitative RT-PCR Analysis of IL-1β Expression

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Brain tissues from the ipsilateral SN were dissected at one day after LPS or PBS injection with IL-4NA or gIgG, and total RNA was extracted in a single step using RNAzol B (Tel-Test, Friendswood, TX) following the instructions of the manufacturer. Total RNA was reverse transcribed into cDNA using AMV reverse transcriptase (Promega, WI, USA) and random primers (Promega). The primer sequences used in this study were as follows: 5′-TGATGTTCCCATTAGACAGC-3′ (forward) and 5′-GAGGTGCTGATGTACCAGTT-3′ (reverse) for IL-1β (378 bp); and 5′-TCCCTCAAGATTGTCAGCAA-3′ (forward) and 5′-AGATCCACAACGGATACATT-3′ (reverse) for glyceraldehyde-3-phosphate dehydrogenase (GAPDH; 308 bp). The PCR amplification consisted of 30 cycles of denaturation at 94℃ for 30 s, annealing at 50℃ for 30 s and extension at 72℃ for 30 s. PCR products were separated by electrophoresis on 1.5% agarose gels, after which the gels were stained with ethidium bromide and photographed. For semiquantitative analyses, the photographs were scanned using the Computer Imaging Device and accompanying software (Fujifilm, Tokyo, Japan).
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4

RNA Isolation and Northern Blot Analysis

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Total RNA was isolated from macrophages with RNAzol B (Tel-Test, Friendswood, TX, USA) by the acid/guanidinium thiocyanate/phenol/chloroform extraction method [25 (link)]. Equivalent amounts of RNA (10 μg/lane) were size fractionated by electrophoresis in 1% agarose gels containing 0.66 M formaldehyde. The RNA was then transferred onto Nytran membranes (GE Life Sciences, Pittsburgh, PA, USA) and cross-linked by exposure to UV light. The membranes were hybridized and washed according to standard procedures [26 (link)]. The cDNA probes used to detect ISG expression have been described previously. Gel-purified insert DNA was radiolabeled by the random-primer method of Feinberg and Vogelstein [27 (link)].
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5

RNA Extraction and cDNA Synthesis

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RNA was extracted from cells using RNAzol B (Tel-Test, Inc., Friendswood, Tex.), and was then converted to cDNA by reverse transcription. Samples were stored at -70°C until ready for analysis by PCR.
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6

RT-PCR Analysis of Inflammatory Markers

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Brain tissues from the ipsilateral SN were dissected at the indicated time points after LPS or PBS injection with capsaicin or vehicle, and total RNA was extracted in a single step using RNAzol B (Tel-Test, Friendswood, TX) following the instructions of the manufacturer. Total RNA was reverse transcribed into cDNA using AMV reverse transcriptase (Promega, Madison, WI) and random primers (Promega). The primer sequences used in this study were as follows: 5′-TGATGTTCCCATTAGACAGC-3′ (forward) and 5′-GAGGTGCTGATGTAC CAG TT-3′ (reverse) for IL-1β (378 bp); 5′-ACACTCTATCACTGG CATCC-3′ (forward) and 5′-AAGGGACACCCTTTCACAT-3′ (reverse) for COX-2; 5′-GCAGAA TGTGACCATCATGG-3′ (forward) and 5′-ACAACCTTGGTGTTGAAGGC-3′ (reverse) for iNOS (557 bp); and 5′-TCCCTCAAGATTGTCAGCAA-3′ (forward) and 5′-AGATCCACAACGGATACATT-3′ (reverse) for glyceraldehyde-3-phosphate dehydrogenase (GAPDH; 308 bp). The PCR amplification consisted of 30 cycles of denaturation at 94 °C for 30 s, annealing at 50 °C for 30 s (for IL-1β and GAPDH or 54 °C for 30 s for iNOS) and extension at 72 °C for 90 s. PCR products were separated by electrophoresis on 1.5% agarose gels, after which the gels were stained with ethidium bromide and photographed. For semiquantitative analyses, the photographs were scanned using a Computer Imaging Device and the accompanying software (Fujifilm, Tokyo, Japan).
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7

Tissue-Specific Cre Recombinase Expression

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Gnao+/f::CaMKIIα-Cre+/Cre mice of 10 weeks of age were used for analyses. Age-matched littermates, without the Cre transgene, were used as controls. For RNA analyses, the brain, liver, heart, lungs, spleen, kidneys and testis were dissected from lethally anesthetized mice and snap frozen. Total RNA was extracted from homogenized frozen tissues using RNAzol B (Tel-Test, Friendswood, TX, USA), and cDNA was synthesized in a 20 μl reaction volume containing 1 μg total RNA using the First Strand cDNA Synthesis Kit (Roche, Indianapolis, IN, USA), according to the manufacturer's recommendations. The RT–PCR reactions were carried out for 30 cycles with primers specific for Cre and for 26 cycles with primers specific for the mouse glyceraldehyde 3-phosphate dehydrogenase gene (Gapdh).
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8

MPTP-Induced Neuroinflammation: qRT-PCR Analysis

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After injection of the TRPV1 agonist and/or antagonists, the mice were killed at 24 h after injection of MPTP, and the SN tissues were rapidly removed. The total RNA was extracted using RNAzol B (Tel-Test, Friendwood, TX, USA) and converted to complementary DNA using Superscript II reverse transcriptase (Life Technologies, Rockville, MD, USA) according to the manufacturer's instructions. PCR was performed with the following primer sequences: 5′-CTGCTGGTGGTGACAAGCACATTT-3′ (forward) and 5′-ATGTCATGAGCAAAGGCGCAGAAC-3′ (reverse) for iNOS; 5′-GCGACGTGGAACTGGCAGAAGAG-3′ (forward) and 5′-TGAGAGGGAGGCCATTTGGGAAC-3′ (reverse) for TNF-α 5′-GCAACTGTTCCTGAACTCAACT-3′ (forward) and 5′-ATCTTTTGGGGTCCGTCAACT-3′ (reverse) for IL-1β and 5′-GCAATTATTCCCCATGAACG-3′ (forward) and 5′-GGCCTCACTAAACCATCCAA-3′ (reverse) for 18s ribosomal RNA. Annealing was performed at 56 °C for 30 s (for iNOS, TNF-α and IL-1β), and PCR reaction was ended with a final extension at 72 °C for 90 s. The PCR products were separated by electrophoresis on 1.5% agarose gels, visualized with ethidium bromide and photographed. For semiquantitative analyses, the photographs were scanned using a Computer Imaging Device and the accompanying software (Fujifilm).
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9

Quantification of Chemokine Receptor Expression

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Total RNA was extracted from MSCs/LacZ and MSCs/Ngn1 using RNAzol B (Tel-Test; Friendswood, TX, USA), and cDNA was synthesized from 1 μg total RNA using the First Strand cDNA Synthesis Kit (Invitrogen, Carlsbad, CA, USA), according to the manufacturer’s recommendations. Real-time PCR was performed to quantify the expression of chemokine receptors using StepOnePlus Real-Time PCR system (Applied Biosystems). Each 20 μl reaction mixture contained 5 pmol of each primer, 10 μl Power SYBR Green PCR Master Mix (Applied Biosystems), and 100 ng cDNA. The PCR protocol consisted of 2 min of denaturation at 95℃ followed by 40 cycles of 95℃ for 15 sec, 65℃ for 30 sec, and 72℃ for 30 sec. The primer sequences utilized are summarized in Table 1.
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10

Fibroblast α7 nAChR Regulation by Nicotine

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Primary lung fibroblasts were plated onto 12-well plates (4 × 104 cells/well) and incubated in DMEM (10% FBS) for 24 h. Fibroblasts were transfected with α7 nAChR or control non-target siRNA (150 ng) according to the manufacturer’s protocol using HiPerFect Transfection Reagent (Qiagen). Transfected fibroblasts were treated with 50 μg/ml nicotine for up to 72 h. RNA was extracted from cells or lung tissue using the reagent RNAzol B™ (Tel-test Inc., Friendswood, TX). Real-time PCR was performed as previously described [17 (link)] utilizing the primers to mouse collagen type I, 18S, IL-1β, and α7 nAChR in a SmartCycler™ system (Cepheid Sunnyvale, CA). Primer sequences are as follows: Mouse collagen type I forward (5’-GTGCTGTTGGTGCTGCTG), reverse (5’-CAGGAGCACCAGCAATAC); 18S forward (5’-GTGACCAGAGCGAAAGCA), reverse (5’-ACCCACGGAATCGAGAAA); IL-1β forward (5’-GAGCACCTTCTTTTCC), reverse (5’-CTGGTGGAAGAAAAGG), probe; and α7 nAChR forward (5’-CTGCTGGGAAATCCTAGGCACACTTGAG or GACAAGACCGGCTTCCATCC), reverse (5’-CCTGGTCCTGCTGTGTTAAACTGCTTC). Negative controls consisted of dH2O and RNA without primers. Bioluminescent RT-PCR was accomplished according to a published method [18 (link)]. Values were normalized to 18S and expressed as relative change vs. untreated mouse lung tissue.
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