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Neural basal

Manufactured by Thermo Fisher Scientific
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Neural Basal is a cell culture medium designed to support the growth and maintenance of neural cells, including neurons and glial cells. It provides a balanced formulation of nutrients, growth factors, and other essential components required for the optimal development and survival of neural cells in vitro.

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11 protocols using neural basal

1

Inducible Pou5f1 Expression in mESCs

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ZHBTc4 mESCs harbouring a DOX repressible Pou5f1 transgene (Niwa et al., 2000 (link)) were propagated on gelatin-coated plates in equal parts DMEM-F12 (Life Technology, 21331-020) and neuralbasal (Life Technology, 21103-049) medium supplemented with 2% fetal bovine serum (Sigma-Aldrich, G1393-100 ml), 2% knockout serum replacement medium (Gibco, 10828-028), 0.04 µg/ml leukemia inhibitory factor (prepared in-house), penicillin/streptomycin (Sigma-Aldrich, P4333-100ml), 0.1 mM β-mercaptoethanol (Gibco, 31350-010), 0.5× B27 supplement (Life Technology, 12587-010), 0.5× N2 supplement (Gibco, AM9759), 3 µM CHIR99021 (Cayman Chemicals, 13122), and 1 µM PD0325901 (Biomol, 103034-25). Cells were passaged using Accutase (Sigma-Aldrich, 6964–100 ml) DOX was used at 1 µg/ml for the depletion experiments or 1.67 ng/ml for the recovery experiments (Sigma-Aldrich D9891-1G). The ZHBTc4 mESCs were authenticated through selection using neomycin as well as via treatment with DOX to check for responsiveness of the Oct4 TET-OFF transgene. Subjecting TT-seq data of the untreated samples to OpenContami (https://openlooper.hgc.jp/opencontami/), we found that ~0.3% of the reads mapped to mycoplasma, revealing that the ZHBTc4 cells used were mycoplasma positive.
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2

Generation of V2a Interneuron Aggregates

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V2a interneurons were generated from Chx10-PAC bact-TdTomato mESCs as previously described [33 (link)]. After induction, EBs were dissociated with 0.25% trypsin and 2.5×107 cells were seeded onto a poly-L-ornithine/laminin coated T25 flask. Chx10+ cells were then selected in half neural basal (Life Technologies)-half DFK5 media with 1x GlutaMAX (Life Tech), 1x B27, 2 μg/mL puromycin and 10 ng/mL of the following growth factors for 24 hr: glial-derived neurotrophic factor (GDNF) (Peprotech), NT-3 (Peprotech), and BDNF (Peprotech). After selection, neurons were lifted from the flasks using Accutase® (Sigma) treatment for 30 min and then 500,000 cells/well were placed into an AggreWell 400 plate with 1,200 small aggregation wells (Stemcell Technologies, Vancouver, BC). V2a interneurons were maintained in V2a neuronal media (half neurobasal–half DFK5 media plus 1x GlutaMAX, 1x B27, and 10 ng/mL of the following growth factors: BDNF, GDNF, NT-3) on the AggreWell™ plate for 2 days to allow for neuroaggregate formation (Figure 1B) [37 ]. After aggregate formation, neuroaggregates were washed from the AggreWell plates with 100 μL of V2a neuronal media.
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3

Doxycycline-mediated Pou5f1 Regulation in mESCs

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Mouse embryonic stem cells (mESCs) harbouring a doxycycline repressible Pou5f1 transgene (Niwa et al., 2000) were propagated on gelatin-coated plates in equal parts DMEM-F12 (Life Technology, 21331-020) and Neuralbasal (Life Technology, 21103-049) Medium supplemented with 2% Fetal Bovin Serum (Sigma Aldrich, G1393-100 ml), 2% Knockout Serum Replacement Medium (Gibco, 10828-028), 0.04 µg/ml Leukemia Inhibitory Factor (prepared in-house), Pennicilin/Streptomycin (Sigma Aldrich, P4333-100ml), 0.1 mM b-Mercaptoethanol (Gibco, 31350-010), 0.5x B27 supplement (Life Technology, 12587-010), 0.5x N2 supplement (Gibco, AM9759, 3 µM CHIR99021 (Cayman Chemicals, 13122), 1 µM PD0325901 (Biomol, 103034-25). Cells were passaged using Accutase (Sigma Aldrich, 6964-100ml), Pou5f1 expression was abolished by treatment with 1µg/ml doxycycline (Sigma Aldrich D9891-1G) for 3 hours, 6 hours, 9 hours, 12 hours, 15 hours (verified by western blot) and 24 hours (verified by immunofluoresence and western blot).
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4

Maintaining Pancreatic Cancer Tumorspheres

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Established pancreatic cancer tumorspheres [10] (link) were maintained in sphere media as described previously [19] (link), [20] (link) with modifications [50% NeuralBasal (Invitrogen, Carlsbad, CA), 1% N2 Supplement (Invitrogen, Carlsbad, CA), 2% B27 supplement (Invitrogen, Carlsbad, CA), 1% Antibiotic-Antimycotic (Invitrogen, Carlsbad, CA), 10 ng/mL BMP4 (Sigma), 10 ng/mL LIF (Sigma), 20 ng/mL human bFGF-2 (Invitrogen, Carlsbad, CA), all in 1∶1 DMEM/F12 (Invitrogen, Carlsbad, CA)]. Tumorspheres were passaged every 6 days. For passaging, tumorspheres were dissociated with 0.05% trypsin for 2–5 min and then immediately washed twice with 40 mL PBS. Cells were then passed through a 40 μm nylon mesh cell strainer, counted and plated in fresh sphere medium in Costar ultra low-attachment 6 well plates (Corning, Lowell, MA).
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5

Culturing mESC, RMES, and HEK 293T Cells

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The mESC and RMES cells were cultured as previously reported [34] (link). In brief, cells were maintained in Neuralbasal (Invitrogen, cat. no. 21103-049)-DMEM/F12 (Invitrogen, cat. no. 11330-032) based medium supplemented with N2 (Invitrogen, cat. no. 17502048), B27 (Invitrogen, cat. no. 17504-044), PD0325901 (Selleck, cat. no. s1036), Chir99021 (Selleck, cat. no. s1263) and mLIF (Millipore, cat. no. ESG1107) at 5% CO 2 and 37°C. HEK 293T cells were maintained in DMEM medium (Gibco, USA) supplemented with 10% FBS (Gibco, USA) and 1% penicillin/streptomycin (Thermo) at 5% CO2 and 37°C.
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6

Directed Differentiation of hESCs to Neural Organoids

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hESC colonies were treated with collagenase and subsequently split using accutase for 5 min at 37°C. The cells were replated into a round-bottomed 96 well ultra-low attachment plate with EB medium (80% DMEM/F12, 20% HI-FBS, 1% NEAA, and 1% GLUTAMAX) and centrifuged for 2 min at 3,000 rpm. After 2–3 days, EBs were individualized by applying protocol from Vichier-Guerre, Parker, Pomerantz, Finnell, and Cabrera (2017) (link), and replated onto matrigel (9–12 mg/ml; cat# 354230; BD bioscience) coated wells in neural differentiation media (DMEM/F12, Neural Basal [Gibco] 1:1; 1:100 N2 [Invitrogen]; 300 mg/ml bovine serum albumin fraction V; 1: 50 B27 [Invitrogen]; bFGF 1:1000, EGF 1:1000 [Invitrogen growth factor], insulin 20 mg/ml and Anti-anti 1:100). After 21 days, the cells were lifted with accutase and replated on matrigel for neural-organoid formation.
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7

Immunofluorescence Staining of Glutamate Receptors

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Neuralbasal (Gibco), B-27 (Gibco), GlutaMax (Gibco), fetal bovine serum (FBS; Invitrogen), Lipofectamine 2000 (Invitrogen), anti-GluR1 mouse monoclonal antibody (Santa Cruz), anti-AMPAR rabbit monoclonal antibody (BBI), anti-GRIN1 rabbit monoclonal antibody (BBI), 4′,6-diamidino-2-phenylindole (DAPI) (Invitrogen), anti-GAPDH mouse monoclonal antibody (Santa Cruz), and SB203580 (Selleck).
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8

Isolation and Culture of Rat Hippocampal Neurons

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Rat hippocampi were dissected from E18–20 animals and meninges were removed. Tissue was minced in Hanks Balanced Salt Solution (HBSS). Minced tissue was incubated in 4.5 mL HBSS with 0.5 mL 0.25% trypsin in a 37°C water bath for 15 minutes with gentle inversion every 5 minutes. Tissue was washed with HBSS +10% fetal bovine serum with DNAse at 37°C for 5 minutes. After washing 2 more times in HBSS at 37°C, tissue was triturated in HBSS. Larger tissue chunks were allowed to settle and the supernatant was transferred to new tubes. Trituration was repeated and supernatants were combined. Cells were counted and plated at 5 × 104 in Neural Basal plus media with B27 supplement (Gibco, Gaithersburg, MD) and held at 37°C in a humidified atmosphere of 9% air/% CO2. Fresh medium was exchanged for half the spent medium volume every 4 days.
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9

Multi-Lineage Cell Culture Protocols

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R1 mESCs (a kind gift from Dr. Shaorong Gao [59 (link)]) were grown on gelatin-coated dish with ESC medium, which consisted of DMEM (Hyclone), 15% (v/v) fetal bovine serum (FBS; Thermo Fisher), 0.1 mM β-mercaptoethanol (Sigma), 2 mM L-glutamine (Thermo Fisher), 0.1 mM nonessential amino acids (Thermo Fisher), 1% (v/v) nucleoside mix (Sigma), and 1000 U/mL recombinant LIF (Millipore). MEFs, mRuby3-NONO-KI HeLa cells [60 (link)], and H2B-GFP stably expressed HeLa Cells were cultured in DMEM (Hyclone) with 15% (v/v) fetal bovine serum (FBS; Thermo Fisher). NPCs were grown in neural basal (Gibco) supplemented with 1× NEAA (Gibco), 0.5 × GlutaMAX (Gibco), 1 × B27 (Gibco), 1 × N2 (Gibco), 0.075% BSA (Sigma), 1 × PS (Hyclone), 10 ng/mL bFGF (PeproTech), 10 ng/mL mEGF (PeproTech).
To induce NPC differentiation [61 (link)], monolayer culture for neural differentiation was performed. Briefly, mESCs were dissociated and plated at a density of 1 × 104 cells/cm2 in N2B27 medium (DMEM/F12, Neurobasal, N2 (Thermo Fisher 17502-048), B27 (Gibco 17504044)) supplemented with 1 mM l-glutamine and 0.1 mM β-mercaptoethanol.
The MEFs isolated from E13.5 to 14.5 days of pregnancy could be maintained in culture consistently for more than 10 passages, and the third or fourth passage was used for experiments.
The cell lines have been authenticated and are available upon request.
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10

Isolation and Culture of Rat Hippocampal Neurons

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The hippocampus of six newborn rats was put into Ca2+/Mg2+-free Hank’s balanced salt solution (HBSS) and cut into 1-mm3 pieces. The tissue was placed in PBS containing 0.25% trypsin for 15 min at 37 °C, and then digestion was stopped with a medium containing serum. After centrifugation, the cells were resuspended and blown into a single-cell suspension at a density of 1 × 106 cells/ml. Cells were then seeded on poly-l-lysine-coated (1 mg/ml; Sigma-Aldrich, MO, USA) glass coverslips on a 6-well culture plate, and incubated in neural-basal (Gibco, Grand Island, NY, USA) containing 2% B27 supplement (Gibco) at 37 °C in 5% CO2 and 95% air with saturated humidity. The culture medium was changed every other day.
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