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Hct mass spectrometer

Manufactured by Bruker
Sourced in Germany

The HCT mass spectrometer is a high-performance analytical instrument designed for the detection and identification of chemical compounds. It utilizes ion trap technology to provide accurate mass measurements and sensitive detection of a wide range of analytes. The HCT mass spectrometer is a versatile tool for applications in various fields, including chemical analysis, environmental monitoring, and life sciences.

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4 protocols using hct mass spectrometer

1

HPLC Analysis of Radioactive Compounds

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HPLC analysis of the described compounds (cold and radioactive) was performed using the same chromatographic equipment, a Perkin-Elmer LC 200 analytical HPLC coupled to an LC 290 UV/Vis detector and a Berthold LB-507 A radiometric detector. The column used was a Supelco Discovery BIO WidePore C18 (250 × 4.6 mm, 5 μm particle size). Mobile Phases A: H2O (TFA 0.1%) B: ACN (TFA 0.1%). Gradient program: 5 min A-95%, 20 min going from A-95% to B-100%, 1 min going back to A-95% and 4 min A-95%. Mass spectra were acquired in an electrospray ionization/quadrupole ion trap (ESI/QITMS) Bruker HCT mass spectrometer. Samples were injected in mixtures of H2O:ACN at a flow rate of 150 µL h−1.
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2

Synthesis and Characterization of Novel Nucleoside Analogue

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All chemical reagents and solvents were obtained from Sigma-Aldrich (Ireland) Ltd. and unless otherwise stated were used without further purification. C8-Alkyne-dU-CEP was purchased from BaseClick GmbH. NMR spectra were recorded on Bruker AC 400 MHz or 600 MHz spectrometers (Supplementary S1). FT-IR spectra were collected on Perkin Elmer Spectrum Two spectrometer. ESI-MS analysis was performed on a Bruker HCT Mass Spectrometer. pH was monitored using a Mettler Toledo InLab Expert Pro-ISM pH probe. Crystallographic data was collected at 100(1)K on a Synergy Dualflex, AtlasS2 diffractometer (Supplementary S2). The structure was solved by dual space methods and refined on F2 using all the reflections (SHELXL-2018). Mass analysis of oligonucleotides was characterised at Matrix Assisted Laser Desorption Ionization Time of Flight (MALDI-TOF) on a Bruker Daltonics Autoflex II instrument (Supplementary S3). Thermal melting experiments were conducted on Agilent Cary 100 UV-Vis dual beam spectrophotometer equipped with a 6 × 6 Peltier multicell system with temperature controller. DNA was quantified on a Jasco UV-Vis spectrophotometer. Polyacrylamide gels were imaged on Syngene G:Box mini 9 gel documentation system.
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3

Comprehensive Analytical Characterization

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Mass spectrometry (MS) was performed on a Bruker HCT mass spectrometer (Bruker Co., Karlsruhe, Germany), interfaced with an atmospheric pressure chemical ionization ion source (i.e., APCI-MS) in negative ion mode. Single-crystal X-ray diffraction data were collected on an Agilent SuperNova diffractometer (Agilent Technologies Ltd., Cheadle, UK) using a Cu Kα (λ = 1.54184 Å) microfocus X-ray source. The crystal data processing was carried out through CrysAlisPro3. Within Olex2 [30 (link)], the structures were solved with the SHELXT and SHELXL-2015 [31 (link)] programs (George M. Sheldrick, Georg-August Universität Göttingen, Tammannstraße 4, Göttingen 37077, Germany), using the intrinsic phasing method, and refined using the full-matrix least-squares analysis based on F2. The SQUEEZE program, part of the crystallographic software PLATON package (Version: 91117, (C) 1980–2021 A.L.Spek, Utrecht University, Utrecht, The Netherlands) [32 (link)], was used to calculate the disordered area of solvent and remove its contributions from the intensity data, as needed. The UV-Vis spectra were recorded on a Shimadzu UV-2550 UV-Vis spectrophotometer (Shimadzu Co., Kyoto, Japan), with redistilled toluene as a solvent.
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4

Characterization of Chemical Compounds

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Chemicals, reagents and high-performance liquid chromatography (HPLC) grade solvents including CHCl3, MeOH and CH3CN were sourced from Sigma-Aldrich (Ireland) or Tokyo Chemical Industry (TCI, UK Ltd) and used without further purification. 1 H and 13 C NMR spectra were obtained on a Bruker AC 400 and 600 MHz NMR spectrometer. pH was monitored by a Mettler Toledo InLab Expert Pro-ISM pH probe. Electrospray ionization mass spectrometry (ESI-MS) measurements were recorded using a ion trap Bruker HCT mass spectrometer with samples being prepared in 100% HPLC-grade CH3CN prior to ESI-MS analysis. UV/Vis absorption spectroscopy studies were carried out on a Shimadzu UV-2600 spectrophotometer. FTIR measurements were conducted on a PerkinElmer Spectrum Two spectrometer. Fluorescence DNA binding studies were carried out on a Perkin Elmer LS55 Fluorescence Spectrometer.
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