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4 protocols using 0.2 μm nitrocellulose membranes

1

Immunoblotting of Ubiquitination Pathway Proteins

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Purified His6-MavC was used to raise rabbit specific antibodies using a standard protocol (Pocono Rabbit Farm & Laboratory). The antibodies were affinity purified as describe38 (link). For immunoblotting, samples resolved by SDS-PAGE were transferred onto 0.2 μm nitrocellulose membranes (Pall Life Sciences cat# 66485). Membranes were blocked with 5% non-fat milk, incubated with the appropriate primary antibodies: anti-UbE2N (Cell signaling, cat# 6999S, Thermo Fisher Scientific, cat# 37–1100), 1:1,000; anti-Flag (Sigma, Cat# F1804), 1: 2000; anti-HA (Santa Cruz, cat# sc-7392 1:1,000, Roche, cat# 11867423001 1:5,000), anti-ICDH39 (link), 1:10,000, anti-actin (Sigma, cat# A2103), 1:5,000, anti-tubulin (DSHB, E7) 1:10,000, anti-Ub K63 (Millipore, cat# 05–1308), 1:1,000, anti-IκBα (Cell signaling, cat# 9242S), 1:1,000, anti-Ub (Santa Cruz cat#sc-8017), 1:1,000, anti-p-IκBα (Cell Signaling, cat# 9246S), 1:1000, anti-UbE2K (Cell Signaling, cat# 8226S), 1:1000, anti-UbE2S (Cell Signaling, cat# 11878S), 1:1000, anti-UbE2E2 (Abcam, cat# Ab177485), 1:1000, anti-His (Sigma, cat# H1029), 1:10,000, anti-p65 (Cell signaling, cat# 8242S), 1:500. Membranes were then incubated with an appropriate IRDye infrared secondary antibody and scanned using an Odyssey infrared imaging system (Li-Cor’s Biosciences).
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2

Immunoblotting of Ubiquitination Pathway Proteins

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Purified His6-MavC was used to raise rabbit specific antibodies using a standard protocol (Pocono Rabbit Farm & Laboratory). The antibodies were affinity purified as describe38 (link). For immunoblotting, samples resolved by SDS-PAGE were transferred onto 0.2 μm nitrocellulose membranes (Pall Life Sciences cat# 66485). Membranes were blocked with 5% non-fat milk, incubated with the appropriate primary antibodies: anti-UbE2N (Cell signaling, cat# 6999S, Thermo Fisher Scientific, cat# 37–1100), 1:1,000; anti-Flag (Sigma, Cat# F1804), 1: 2000; anti-HA (Santa Cruz, cat# sc-7392 1:1,000, Roche, cat# 11867423001 1:5,000), anti-ICDH39 (link), 1:10,000, anti-actin (Sigma, cat# A2103), 1:5,000, anti-tubulin (DSHB, E7) 1:10,000, anti-Ub K63 (Millipore, cat# 05–1308), 1:1,000, anti-IκBα (Cell signaling, cat# 9242S), 1:1,000, anti-Ub (Santa Cruz cat#sc-8017), 1:1,000, anti-p-IκBα (Cell Signaling, cat# 9246S), 1:1000, anti-UbE2K (Cell Signaling, cat# 8226S), 1:1000, anti-UbE2S (Cell Signaling, cat# 11878S), 1:1000, anti-UbE2E2 (Abcam, cat# Ab177485), 1:1000, anti-His (Sigma, cat# H1029), 1:10,000, anti-p65 (Cell signaling, cat# 8242S), 1:500. Membranes were then incubated with an appropriate IRDye infrared secondary antibody and scanned using an Odyssey infrared imaging system (Li-Cor’s Biosciences).
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3

Western Blot Analysis of VGLL3 Protein Expression

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Total cell lysates were isolated using cell lysis buffer (RIPA buffer: Cell Signaling Technology #9806, Danvers, MA) containing protease inhibitor cocktail (Roche, Nutley, NJ). Protein concentrations were determined by BCA assay (Sigma-Aldrich, St. Louis, MO). Proteins were separated by SDS-PAGE and transferred from gels to 0.2 μm nitrocellulose membranes (Pall Corporation, Washington, NY). The nitrocellulose membrane was further incubated overnight at 4°C with rabbit anti-VGLL3 (1:1000, Novus Biologicals, NB100-56875, Centennial, USA) and rabbit anti-GAPDH (1:2000, Novus Biologicals, 4650S, Centennial, USA). After that membranes were incubated with HRP-conjugated anti-Rabbit IgG (1:1000, Cell Signaling Technology, 7074S, Danvers, MA) secondary antibody for 1 hour at RT, protein bands were visualised using western blotting luminol reagent (Santa Cruz Biotechology, Inc., Dallas, Texas).
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4

Western Blot Analysis of Epithelial Markers

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Total cell lysates were isolated using cell lysis buffer (150 mM NaCl, 50 mM Tris pH 7.4, 1% NP-40, 1 mM EDTA, 1 mM sodium orthovanadate, 1 mM NaF, and 1 mM sodium pyrophosphate) containing proteinase inhibitor cocktail (Roche, Nutley, NJ). Protein concentrations were determined by BCA assay (Sigma-Aldrich, St. Louis, MO). Proteins were separated by SDS-PAGE and transferred from gels to 0.2 μm nitrocellulose membranes (Pall Corporation, Washington, NY). Protein bands were visualized using western blotting luminol reagent (Santa Cruz Biotechology, Inc., Dallas, Texas) after binding with a HRP-conjugated secondary antibody. Anti-Cytokeratin 7 (sc-23879), anti-Cytokeratin 18 (sc-515852), anti-EpCAM (sc-25308), anti-α-Actinin (sc-17829), and anti-GAPDH (sc-59541) antibodies were obtained from Santa Cruz Biotechnology, while anti-E-cadherin (#14472), anti-CD133 (#5860), and anti-CD44 (#3570) antibodies were purchased from Cell Signaling Technology (Danvers, MA)
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