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5 protocols using anti rat hrp

1

Comprehensive Antibody Panel for Immunoanalysis

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The following primary antibodies were used for flow cytometry: anti-MICA (clone 159227; R&D Systems), anti-MICB (clone 236511, R&D Systems), anti-ULBP1 (clone 170818; R&D Systems), anti-ULBP2/5/6 (clone 165903; R&D Systems) and anti-ULBP3 (clone 166514, R&D Systems).
The following primary antibodies were used for immunofluorescence: anti-PDI (ab3672, Abcam), anti-FLAG tag (Clone L5, Biolegend) and anti-MICA (clone 159227, R&D Systems).
The following primary antibodies were used for western blotting: anti-MICA (Clone EPR6568, Abcam), anti-FLAG tag (Clone L5, Biolegend), anti-GAPDH (clone 6C5, Santa Cruz) and anti-vinculin (clone EPR8185, Abcam).
The following secondary antibodies were used: anti-mouse AlexaFluor 647, anti-mouse PE, anti-mouse biotin, anti-rabbit biotin, anti-rat biotin, anti-rabbit Cy3, anti-rat 488, streptavidin-AlexaFluor 647, streptavidin-horseradish peroxidase (HRP), anti-mouse-HRP, anti-rat-HRP and anti-rabbit-HRP, all purchased from Jackson Laboratories.
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2

Immunoblotting of Phosphorylated ERK1/2

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Frozen cell pellets were dissolved in Laemmlie-buffer (60 mM Tris-HCl, 10% glycerol, 2% SDS, 10% β-mercaptoethanol, 0.01% bromophenol blue; pH 6.8) (10 µl buffer per 100,000 cells) and subjected to sonication (3–5 s on ice with a UP50H sonicator equipped with an MS1 sonotrode) (Hielscher, Teltow, Germany). Samples were then heated to 89°C for 3 min, spun for 5 min at room temperature and the supernatants used for standard SDS-PAGE with 12% gels. Wet blotting was carried out in Mini Trans-Blot modules (Bio-Rad Laboratories) using nitrocellulose membranes and blotting buffer (20% v/v methanol, 25 mM Tris-HCl, 192 mM glycine, pH 8.6). The following antibodies were used for target detection: anti-ERK1/2 (Cell Signaling Technology, Frankfurt am Main, Germany; no. 9102), anti-ERK1/2 (Santa Cruz Biotechnology, Heidelberg, Germany; sc-94), anti-phospho-ERK1/2 (Cell Signaling Technology; no. 9101), anti-tubulin (Biozol, Eching, Germany; BZL03568). The secondary antibodies were from Jackson ImmunoResearch Laboratories (Newmarket, UK): anti-rat-HRP (112-036-062), anti-rabbit HRP (111-036-045). A freshly made solution of luminol (2.5 mM), p-coumaric acid (0.2 mM) and H2O2 (0.01%) in 100 mM Tris-HCl (pH 8.8) was used for chemiluminescent detection [29] (link).
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3

Comprehensive Biochemical Assay Protocol

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Olaparib, rucaparib, WNT-C59, and PRI724 were obtained from Selleckchem. Pyrvinium pamoate was obtained from Sigma Aldrich. The following antibodies were obtained from the indicated suppliers: BRCA2 (Bethyl, Cat#A303-434A, 1:2000), Vinculin (Cell Signaling Technology, Cat#13901, 1:1000), WNT3A (R&D systems, Cat# MAB9025-100, 1:1000), γH2Ax (Ser139) (EMD Millipore, Cat# 05-636, 1:1000), mouse anti-β-Actin (Abcam, Cat# ab6276, 1:10,000), Rabbit anti-β-Actin (Abcam, Cat# ab8227, 1:10,000), Rad51 (Abcam, Cat# ab176458). Anti-rat HRP (Jackson ImmunoResearch, Cat# 112-035-062, 1:5000)
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4

Probing ARTD10 Protein Interactions

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The following reagents were used: β-NAD+ (Sigma), 32P-NAD+ (Perkin Elmer), interferon α (Peprotech), lipopolysaccharid (LPS) of E. coli (Sigma), 12-O-Tetradecanoylphorbol-13-acetate (PMA) (Sigma), protease inhibitor cocktail (PIC) (Sigma), H2O2 (Merck KGaA), Glutathione-sepharose (Sigma), TALON metal affinity resin (BD Bioscience), ADPr (Adenosine 5′ diphosphoribose sodium-salt, Sigma), anti-HA (3F10, Roche), anti-HA (Covance), anti-PAR (Trevigen), anti-α-Tubulin (Sigma), anti-ARTD10 (5H11)2 (link), anti-ARTD10 purified rabbit antibodies10 (link), anti-Actin (C4, MP Biomedicals), anti-FLAG (Sigma), anti-GFP (Rockland), anti-MCM2 (N-19, Santa Cruz), goat anti-rat IgG (H + L) secondary antibody Alexa Fluor 555 conjugate (Invitrogen), anti-rabbit-HRP (Jackson Immunoresearch), anti-mouse-HRP (Jackson Immunoresearch), anti-rat-HRP (Jackson Immunoresearch). Rabbit polyclonal, purified ARTD8-specific antibodies were generated against the peptide NLVSDKIPKAKDTQG (aa 1193–1207).
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5

Comprehensive Immune Cell Analysis Protocol

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For Western blotting, Ii protein was detected using a rat anti–mouse CD74-specific mAb clone ln-1 (BD) followed by anti–rat HRP (The Jackson Laboratory). Purified rat anti-CD107a (Biozol), goat anti-CTSS (Acris), and goat anti-CTSD and -CTSL (R&D Systems) antibodies were also used. For FACS analysis, I-Ab was detected using mouse anti-MHCII clone AF6-120.1 Alexa Fluor 647 (BD). MHCII bound to Ii was stained using mouse clone 15G4 FITC (Santa Cruz Biotechnology, Inc.). Intracellular LAMP-1 was detected using anti–CD107a-FITC or –CD107a-PE (mouse clone 1D4B; BD). CD11c was stained using Armenian hamster mAb clone N418 (eBiosciences).
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