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11 protocols using anti tigit

1

OSCC Secretome Effects on Teff and Tregs

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Sorted Teff and Tregs from healthy donors were activated with anti-CD3/CD28 beads (1:5 ratio) (Life Technologies) and 1000 UI IL-2 for 5 days a 37°C. Then, 100 uL of OSCC and control secretomes were added to 2x105 Teff or 2x105 Tregs (in 100uL) in XVIVO-15 serum-free medium 48h a 37°C. After the incubation, the supernatants were stored for further cytokine production measurement using the Cytokine Bead Array Th1/2/17 Kit (BD) and the cells were counted (CountBright Absolute Counting Beads), stained with Live/Dead dye (Life Technologies), anti-CXCR3, anti-CCR4, anti-CCR6, anti-CCR8, anti-PD-1 and anti-TIGIT (all BioLegend) and analyzed by flow cytometry. For the analysis of cells after secretome co-culture, cells were washed after co-culture with secretome and cultured in new media X-VIVO15 (LONZA) serum-free medium for 48 h at 37°C with anti-CD3/CD28 beads (1:5 ratio) (Life Technologies) and 1000 UI IL-2. After the incubation, the supernatants were stored for further cytokine production measurement and the cells were stained with Live/Dead dye (Life Technologies), anti-CCR6, anti-CCR8, anti-PD-1 and anti-TIGIT (all BioLegend).
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2

Immunophenotyping of Cryopreserved PBMCs

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Cryopreserved PBMC were isolated and used for immunophenotypic staining as previously described (108 (link)). Cells were stained with Zombie NIR fixable viability stain (BioLegend, San Diego, USA) and the following anti-human monoclonal fluorochrome-conjugated antibodies: anti-CD45RA, anti-CD4, anti-TCR-γ/δ (BD Biosciences, Heidelberg, Germany), anti-TCR-Vδ2 (Beckman Coulter Life Sciences, Indianapolis, USA), anti–HLA-DR, anti-CD27, anti-CD279 (PD-1), anti-TIGIT, anti-CD8, anti-CD28, anti-CD39, anti-CD38, anti-CD19, anti-CD3, anti-CD73 and anti-CD14 (all BioLegend) (Supplementary Table 2). Cells were incubated for 30 minutes at room temperature with the respective antibodies. After washing, cells were fixated with 4% paraformaldehyde. All samples were run on a Becton Dickinson LSR Fortessa flow cytometer with FACS Diva version 8 (BD Biosciences).
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3

CD4+ T Cell Subpopulation Isolation and Phenotyping

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CD4+ T cells were enriched by magnetic activated cell sorting (MACS) using 20 µl of anti-CD4 MicroBeads (anti-CD4 MicroBeads, human, Miltenyi Biotec, Germany) and 80 µl MACS buffer (PBS with 0.5% BSA and 2 mM ethylenediaminetetraacetic acid) per 107 cells. CD4+ T cells were stained for surface expression in MACS buffer at a concentration of 2 × 108 cells/ml. Cells were washed and stained with 4′,6-diamidino-2-phenylindole (1:250) and then sorted using the flow cytometer BD FACSAria II (BD Biosciences, Germany) into the following CD4+ T-cell subpopulations: Treg (CD25highCD127low) and non-Treg: TN (CD45RA+ CCR7+), TCM (CD45RA-CCR7+), TEM (CD45RA− CCR7−), and TEMRA (CD45RA+ CCR7−).
Antibodies used for surface staining were anti-CCR7 (GO43H7, 1:50), anti-CD25 (M-A251, 1:100), anti-CD45RA (HI100, 1:50), anti-CD127 (A019D5, 1:100), anti-CD3 (UCHT1, 1:200), anti-CD4 (OKT4, 1:200), anti-PD-1 (EH12.2H7, 1:20), anti-TIGIT (A15153G, 1:20), anti-TIM-3 (F38–2E2, 1:20), and LAG-3 (11C3C65, 1:20) from BioLegend, and anti-KLRB1 (191B8, 1:10), anti-KLRF1 (4A4.D10, 1:50), and anti-KLRG1 (REA261, 1:10, 1:50 since 2018/06 due to more concentrated formulation) from Miltenyi Biotec. See also Supplementary Fig. 5 for the pre-gating strategy.
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4

Comprehensive Immune Profiling of CAR-T Cells

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The following mAbs were used in this study; anti‐CD8α, anti‐TIGIT, anti‐CD107a, and anti‐Bcl‐2 (BioLegend), anti‐CD90.2, anti‐PD‐1, anti‐LAG‐3, anti‐TIM‐3, and anti‐Vα8.3 mAb (Thermo Fisher Scientific), antihuman CD20 (BD Biosciences), anti‐Bcl‐xL (Abcam), and anti‐Bim (CST). Annexin V (BD Biosciences) and Zombie Yellow viability dye (BioLegend) were also used. Biotinylated recombinant protein L (GenScript) was used to detect CAR‐T cells, as previously reported.16 Intracellular protein staining buffer set (Thermo Fisher Scientific) was also used in some experiments. APC‐conjugated antihuman IgG mAb (BioLegend) was used to detect the binding of mouse PD‐L1‐human Fc fusion protein (R&D Systems). Antimouse CD16/CD32 mAb was used for blockade of non‐specific binding of mAb to Fcγ receptors. Flow cytometric data were acquired by EC800 (SONY) or BD LSRFortessa X‐20 cell analyzer (BD Biosciences), and analyzed using FlowJo software (FlowJo, LLC).
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5

Analyzing B-cell Suppression of CD8+ T-cell Activation

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CD8+ T cells were isolated from spleens of naïve mice using EasySep™ Mouse CD8+ T-Cell Isolation Kit (StemCell Technologies,). Cells were labeled with the eBioscience™ cell proliferation dye eFluor 450 (Thermo Fischer). To test B-cell ability to suppress activated CD8+ T-cell proliferation, cells were mixed at 1:1 B: T ratio. CD8+ T-cell activation was assessed using the anti-CD3/CD28 T-cell activating beads used at 1:3 beads:CD8+ T-cell ration (Invitrogen, Thermo Fischer) plus IL2 (50 U/mL, Peprotech) for 3 days in complete RPMI. T-cell proliferation (eFluor450 dye dilution) and effector T-cell factors such as granzyme B and IFNγ (Supplementary Table S1) were analyzed by flow cytometry. Anti-IL10 (Thermo Fischer), anti-TGFβ (R&D), anti-TIGIT (BioLegend), and anti–PD-L1 (BioXcell) were added every day in the culture at 10 μg/mL. Alternatively, expression of TGFβ (LAP), IL10, and IFNγ by B cells while cocultured with CD8+ T-cells was examined after 36 hours (Supplementary Table S4).
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6

Comprehensive Immune Profiling of Tumor Samples

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Samples were obtained from blood, spleen, or tumors, as indicated. Tumor samples were weighed after harvest and digested/dissociated, and total cells were counted. Excess surface marker antibodies were mixed with cells and incubated at 4°C for 30 min. After treatment with the Cyto-Fast™ Fix/Perm Buffer Set (Biolegend 426803) or Foxp3/Transcription Factor Staining Buffer Set (Invitrogen 00-5523-00), intracellular markers or Nucleoprotein were stained with the corresponding antibodies. The panel included the following reagents: Zombie NIR™ Fixable Viability Kit, anti-CD45 (Biolegend 103128), anti-CD3 (Biolegend 100203) anti-CD4 (Biolegend 100539), anti-CD8a (Biolegend 100711), anti-CD100 (BD 745346), IgG2a,κ Isotype Control (BD 563236), anti-CD11B (Biolegend 101255), anti-F4/80 (Biolegend 123135), anti-CD11C (Biolegend 117317), anti-CD86 (Biolegend 105037), and anti-CD206 (Biolegend 141706), anti-PD-1 (Biolegend 135227), anti-LAG-3 (Biolegend 125209), anti-TIM-3 (Biolegend 119717), anti-TIGIT (Biolegend 142111).
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7

Comprehensive NK Cell Phenotyping

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The following fluorescently conjugated antibodies were used for phenotypic analysis of NK cells: anti-LFA-1 (363404); anti-CXCR3 (353720); anti-PD-1 (329906); anti-CD107a (328612); anti-NKP44 (325116); anti-CD158e1 (312706); anti-CD158d (347006); anti-CD27 (356412); anti-CCR4 (359412); anti-DNAM-1 (338316); anti-CD16 (302040); anti-Granzyme B (515406); anti-CD62L (304806); anti-CD69 (310910); anti-NKP80 (346706); anti-NKP30 (325210); anti-CD158f (341304); anti-CD158b (312612); anti-Tim-3 (345012); anti-CD94 (305504); anti-TIGIT (372706); anti-TRAIL (308206); anti-CD57 (322306); anti-CX3CR1 (341610); anti-NKG2D (320808); anti-Perforin (353310); anti-Ki67 (350504); anti-IFN-γ (506518); anti-CD94 (305506); anti-NKp46 (331916); anti-CTLA4 (369614); anti-CD96 (338416); anti-41BB (309818); anti-CD25 (356108) were purchased from Biolegend. anti-CD159a/NKG2A (FAB1059P) and anti-NKG2C (FAB138G) were purchased from R&D.
The following fluorescently conjugated antibodies were used to identify immune cell types in eNK or PBMC: anti-human Lineage Cocktail (348803); anti-CD56 (362550); anti-CD3 (300430); anti-CD33 (366620); anti-HLA-DR (307606); anti-CD14 (301836); anti-CD19 (302242); anti-CD11b (301322); anti-CD25 (356108); and anti-FOXP3 (320108) were purchased from Biolegend, San Diego, CA, USA.
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8

Immune Checkpoint Expression in Activated CD8+ T Cells

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CD8+ T lymphocytes were activated for 12 hours in 96-well plates coated with anti-CD3 Ab (OKT3 clone, CRL-8001, ATCC) at different concentrations ranging from 50 mg/mL to 400 ng/mL. Immune checkpoints (ICs) expression was determined by labeling with anti-PD-1 (Clone EH12, BD Biosciences), anti-TIGIT (Clone A15153G, BioLegend), anti-LAG-3 (Clone 11C3C65, BD Biosciences), anti-Tim-3 (Clone F38-2E2, Biolegend) and anti-KLRG1 (Clone 14C2A07, Biolegend) antibodies. An anti-CD25 (clone M-A251, BD Biosciences) specific-antibody was also used as a T cell activation marker. The expression of the main costimulation molecules was assessed on resting T lymphocytes with anti-CD45RO (clone UCHL1, BD Biosciences), anti-CD28 (Clone CD28.2, BD Biosciences), anti-CD27 (Clone L128, BD Biosciences), anti-CD2 (Clone RPA-2.10, BD Biosciences) and anti-LFA-1 (Clone HI111, BD Biosciences) monoclonal antibodies. All the cytometric analyses were performed on a Facs Canto II (BD Biosciences).
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9

Assessing Immune Checkpoint Inhibitors in AML

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PBMCs from AML patients were incubated with 10 mg/mL anti-PD-1 (nivolumab, Bristol-Myers-Squibb), anti-TIM-3 (BioLegend) or anti-TIGIT (BioLegend) antibodies for 24 hours in 37°C and 5% CO2, followed by incubation with 50 ng/mL PMA and 1 mg/mL ionomycin for 1 hour plus 3-hour incubation with brefeldin A (BioLegend). Unstimulated cells were used as control. Cells were then washed in PBS, stained with anti-CD45-PE (EXBIO), anti-CD3-AlexaFluor700 (EXBIO) and anti-CD56-PerCP-Cy5.5 monoclonal antibodies (BioLegend), fixed in fixation/permeabilization buffer (eBioscience), further permeabilized with permeabilization buffer (eBioscience) and intracellularly stained with anti-IFN-γ-PE-Cy7 antibodies (eBioscience).
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10

Immune Checkpoint Blockade Assay

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For the blockade of immune checkpoints in cytotoxicity and CD107b mobilisation assays the following antibodies were used: anti-IgG1, anti-IgG2, anti-PD1, anti-TIGIT, anti-LAG3, anti-TIM3 and anti-BTLA (all BioLegend). Anti-NKG2A antibodies were developed using a plant manufacturing system (57 ). All antibodies were used at final concentrations of 5µg/ml.
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