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Lsm 780 nlo microscope

Manufactured by Zeiss
Sourced in Germany

The LSM 780 NLO microscope is a high-performance confocal laser scanning microscope designed for advanced imaging applications. It features a multiphoton excitation capability, enabling non-linear optical imaging of living samples. The microscope is equipped with a tunable pulsed laser source and a comprehensive set of detection channels, providing the flexibility to capture high-resolution images and data from a variety of biological samples.

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15 protocols using lsm 780 nlo microscope

1

Microscopic Visualization of Bacterial Viability

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Microscopic images were obtained using a Zeiss LSM 780 NLO microscope. To visualize the bacterial strains, dyes were used. Prior to treatment with either violacein or B. bacteriovorus HD100, each of the bacterial cultures were mixed with 6 µM Syto-9 (Invitrogen, USA). This is a live stain and all viable bacterial cells were fluorescently green afterwards. After washing the cells with HEPES to remove any extra dye, they were exposed to either the predatory cells (PPR of 0.1) or 20 mg/ml of violacein in HEPES. After one hour, propidium iodide (Invitrogen, USA) was added to the bacterial cultures to a final concentration of 30 µM. This dye is a dead stain and labels any non-viable bacterial cells red. After 30 minutes at room temperature, the cells were pelleted (16,000 × g, 5 min), washed and resuspended in HEPES before being imaged.
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2

Immunofluorescence Staining of Cells

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For immunofluorescence, cells were seeded onto 13 mm diameter glass coverslips and maintained under usual culture conditions until sub-confluence (less than 80%). Each sample was then fixed in 4% formaldehyde for 10 min, permeabilized with 0.5% Triton X-100 for 10 min and blocked in 1% Bovine Serum Albumin for 60 min, all at room temperature. Primary antibody anti-GFP (1:500, ab6556, Abcam, Cambridge, UK) was incubated overnight at 2–8°C and washed three times with PBS buffer for 10 min. Alexa Fluor 594-phalloidin (1:100, A12381, Thermo Fischer Scientific, Massachusetts, USA) and secondary antibody AlexaFluor 488 goat anti-rabbit IgG (1:400, A27012, Thermo Fischer Scientific) were incubated 1 h at room temperature. Coverslips were mounted using VECTASHIELD Anti-fade Mounting Medium with DAPI (H-1200, Vector Laboratories, CA) and images were acquired with a confocal Zeiss LSM 780-NLO microscope.
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3

Two-Photon Imaging of Embryonic Cells

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Embryos were fixed in 4% formaldehyde in Danieau’s solution at 4°C overnight. The next day, embryos were washed with Danieau’s solution and then permeabilized with 0.2% Triton X in Danieau’s solution for 30 min. Subsequently, embryos were incubated for 10 min in DAPI (1 µg/ml) and then washed several times with Danieau’s solution. Embryos were placed in an inverted agarose holder and covered with Danieau’s solution for imaging. An upright Zeiss LSM 780 NLO microscope equipped with a coherent Chameleon Vision II infrared laser was used for two-photon excitation (Carl Zeiss AG, Oberkochen, Germany). DAPI was excited with 780 nm and detected using a non-descanned GaAsP detector (BIG-Module) with BP450/60 or SP485. Samples were imaged with either a Zeiss W Plan-Apochromat 20 × 1.0 or 40 × 1.0 dipping objective. Images were acquired using a four tile scan of multiple z-sections (3–3.5 µm steps). Tiles were stitched with the ZEN software (RRID:SCR_013672, Zeiss). Images were imported into the Imaris software (RRID:SCR_007370, Bitplane, Belfast, Northern Ireland) and the spot tool was used to calculate cell number.
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4

Multicolor immunofluorescence protocol

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Cells were transfected in 8-well glass chambers (Millipore) and fixed with 4% paraformaldehyde 24 hours later. Cells were permeabilized with 0.1% Triton-X100 and blocked with 10% donkey serum. GFP and mCherry fluoresce was detected directly. The primary antibodies used were: SC-35 (1:300; Abcam, ab11826), PML (1:50; Santa Cruz, sc-966), coilin (1:500; Santa Cruz Biotechnology, sc-32860), B23 (1:200, Santa Cruz Biotechnology, sc-56622) Myc-tag (1:500 Cell Signaling Technologies, 71D10), HA-tag (1:250; Clone 3F10, Roche, 11867423001), FK2 (1:50; Enzo Life Sciences, BML-PW8810), V5-tag (1:300, Novus Biological, NB600–379). The secondary antibodies used were Alexa 555, 647 (1:5,000; Thermo-Fisher), and CF405S (1:1000; Biotium). Samples were mounted on ProLong Gold antifade with or without DAPI and cured before imaging on a Zeiss LSM 780 NLO microscope. Images were prepared with the Fiji software.
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5

NAD(P)H Fluorescence Lifetime Imaging

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Mouse neurons, and HEK293 cells were grown in 35-mm glass-bottom dishes, and maintained at 37 °C in 5% CO2/95% air on the stage of the Zeiss LSM-780 NLO microscope. All cultures were serum- starved in Hank’s balanced salt solution (HBSS) for 2 h before addition of ATN 224 to 2 μM, and imaged before and 60 min after treatment. The laser was tuned to 740 nm with an average power of 7 mW at the specimen plane, and NAD(P)H fluorescence was collected using a 450–500 nm emission filter (Objective lens, 20×). For each experiment, 5–10 field of views were recorded in the descanned mode, and then each field of view was subjected to a 40-s acquisition in the non-descanned mode. The laser power and acquisition time were selected to ensure enough photons per pixel while avoiding photodamage to cells. Next, ROIs corresponding to mitochondria were selected from the NAD(P)H photon image for lifetime analysis. Both the lifetimes and fractions of free and enzyme-bound NAD(P)H were calculated on a per pixel basis, from which pseudo-color images of the bound NAD(P)H and histograms of the frequency distribution of a2% (fraction of bound NAD(P)H) were generated.
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6

Optogenetic Manipulation of Rho Signaling

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Embryos expressing the Rho‐activating optogenetic system were dechorionated with sodium hypochlorite (100%), aligned on a glass coverslip coated with heptane glue and covered with a layer of halocarbon oil Voltalef 10S (Merk). The coverslip was mounted on a microscope slide platform to visualize embryos on a standard upright microscope using a 10× objective (Carl Zeiss). Microinjection was performed using an Eppendorf microinjector (model 5242). Microinjection pipettes were pulled from borosilicate glass capillaries (1.2‐mm outer diameter × 0.94‐mm inner diameter; Harvard Apparatus), using a P‐97 Flamming/brown puller (Sutter Instrument). Embryos were injected in the posterior pole with water (control) or the ROCK inhibitor Y‐27632 at a concentration of 50 mM (in aqueous solution). The entire sample preparation and injection procedure were done in red light to prevent pre‐mature activation of the optogenetic system.
Optogenetic experiments following embryo injections were done as described above at a Zeiss LSM780 NLO microscope, except that the cells were simulated at the apical surface with a single photo‐activation using a laser power of 13 mW. The mCherry signal was recorded for 1.5 min, and a final 2‐photon stack with lower zoom was recorded.
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7

High-Pressure Freezing and Cryo-Imaging of 3D Cell Cultures

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We followed the procedure described in Ronchi et al.30 (link) Briefly, high-pressure freezing was performed in HPF carriers with an HPM 010 (AbraFluid AG, Rebstein, Switzerland). When necessary, before high-pressure freezing, the carriers containing the 3D cell cultures were dipped for 1 min either directly in Cellbanker 2 cryo-preserving medium or in 20% Ficoll 70.000 MW diluted in Mammary Epithelial Cell Growth Medium. Next, freeze-substitution was performed with 0.1% uranyl acetate (UAc) in acetone. After 72 h incubation at -90 °C, the temperature was increased to allow the reaction of UAc with the biological material. The samples were then rinsed with pure acetone before infiltration of the resin lowicryl HM20. The resin was polymerized with UV at -25 °C. The resin-embedded samples were transferred into 35 or 10 mm cell culture dish with water as immersion medium and imaged at an inverted Zeiss LSM 780 NLO microscope equipped with a 25x Plan-Apochromat 25x 0.8 NA Imm Korr DIC multi immersion objective lens. Surface branding was performed with the 2-photon Coherent Chameleon Ultra II Laser (Coherent Inc, Santa Clara, USA) of the Zeiss LSM 780 NLO microscope and the “bleaching” function of ZEN black software.
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8

NAD(P)H Fluorescence Lifetime Imaging

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Mouse neurons, and HEK293 cells were grown in 35-mm glass-bottom dishes, and maintained at 37 °C in 5% CO2/95% air on the stage of the Zeiss LSM-780 NLO microscope. All cultures were serum- starved in Hank’s balanced salt solution (HBSS) for 2 h before addition of ATN 224 to 2 μM, and imaged before and 60 min after treatment. The laser was tuned to 740 nm with an average power of 7 mW at the specimen plane, and NAD(P)H fluorescence was collected using a 450–500 nm emission filter (Objective lens, 20×). For each experiment, 5–10 field of views were recorded in the descanned mode, and then each field of view was subjected to a 40-s acquisition in the non-descanned mode. The laser power and acquisition time were selected to ensure enough photons per pixel while avoiding photodamage to cells. Next, ROIs corresponding to mitochondria were selected from the NAD(P)H photon image for lifetime analysis. Both the lifetimes and fractions of free and enzyme-bound NAD(P)H were calculated on a per pixel basis, from which pseudo-color images of the bound NAD(P)H and histograms of the frequency distribution of a2% (fraction of bound NAD(P)H) were generated.
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9

Intravital Microscopy of Immune Cells

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Mice were prepared for intravital microscopy as previously described (Dudeck et al., 2011a (link)). In brief, animals were subjected to intubation narcosis with a mixture of Isofluran (1.0%) and oxygen (99%) with a mechanical ventilator (Mini-Vent, Hugo-Sachs Elektronik). Two-photon intravital microscopy was performed with a Zeiss LSM780 NLO microscope with simultaneous detection via four external non-descanned detectors. Illumination was performed at 920 nm with a Chameleon Vision II (Coherent, Inc.) laser (10–12% laser power, at 1,400 mW maximum power) via a 20× water-dipping lens with 1.0 NA. GFP-expressing DCs were detected with a 525/50 bandpass filter (BP), tdRFP-expressing MCs with a 600/20 BP, and blood vessels by i.v. injection of 12.5 µl Qtracker 705 nontargeted Qdots (Invitrogen) in 83 µl isotonic NaCl (BP 710/40). Collagen I structures were visualized by its SHG (<485 nm, BP 450/70). For visualization, raw data were processed and reconstructed using Imaris (Bitplane) and represented as maximum intensity projection (MIP) or 3D-rendered z-stacks. Time-lapse series were recorded with a rate of 1 z-stack per minute, a pixel size of 0.24 µm, and a z-spacing of 4 µm encompassing 84 µm in z and an area of 250 × 250 µm in xy.
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10

Alginate Capsule Dynamics Visualization

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For high-temporal resolution experiment, cell monolayers in capsules were embedded in 0.4% agarose for imaging in a 35 mm glass-bottom dish. The MatTek dish was priced on the side with a 19G hot needle to introduce teflon tubing into the dish sterilely for alginate lyase (Sigma-Aldrich, ref. A1603) injection. The MatTek dish was mounted onto inverted LSM780 NLO microscope (Carl Zeiss) (section Imaging). The 1mL of PBS alginate lyase solution (20 units per 1mL of PBS) was added both after 1min of imaging and after 20 min of imaging, resulting in total amount of alginate lyase of 40 units in MatTek petri dish. The imaging was performed with microscope parameters mentioned in section Imaging. For each capsule, confocal equatorial planes were acquired with time interval of 15 s for 2 hours with definite focus (autofocus). For low-temporal resolution, the experiment was conducted as a high-temporal resolution with addition of medium alginate lyase solution giving final alginate lyase amount of 75 units in MatTek dish. The imaging of capsule equatorial planes was performed with time interval of 10 min for 19 hours and with definite focus (autofocus).
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