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37 protocols using mab348

1

SDS-PAGE Analysis of APP, BACE1, and PKA

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The extracted proteins were separated by electrophoresis with 10% SDS-PAGE. Gel was run at 80 V for 20 min and 120 V for 60 min and then transferred onto PVDF membranes at 4°C at 80 V for 1.5 h. The target proteins APP, BACE1, and PKA were measured by incubating with the primary antibodies against APP (1 : 2000, MAB348, Millipore, USA), BACE1 (1 : 2000, ab183612, Abcam, USA), p-PKA (1 : 2000, ab32390, Abcam, USA), and PKA (1 : 2000, ab75993, Abcam, USA) at 4°C overnight. After washing three times with TBST, the corresponding secondary antibody was used at a dilution of 1 : 2000 (bs-40295G, bs40296G, Bioss, China), followed by visualization with the ECL kit (mixed with 1 : 1, PE0010, Solarbio, China). The exposure was completed in a dark room with the chemiluminescence gel imaging system (C600, Azure Biosystems, USA). The antibodies against GAPDH (1 : 2000, TA-08, Zsbio, China) and β-actin (1 : 2000, bs-0061R, Bioss, China) were used as internal controls. Quantitative results were expressed as a ratio of APP to GAPDH, BACE1 to β-actin, and p-PKA to PKA and then compared in each group to measure relative changes.
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2

NR1 and MBP Labeling in Mouse Optic Nerve

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For NR1 labeling, mice were perfused with ice-cold artificial cerebrospinal fluid (ACSF). Optic nerves were isolated and immersion fixed with 4% PFA for 2 hr at RT and prepared for later cryo-sectioning. Slide-mounted sections (12 μm) were air-dried at RT and then treated with 0.3% Triton X-100 and 5% horse serum for 1 hr. Primary antibodies for NR1 (1:250, Millipore Cat# MAB363, RRID: AB_94946) and MBP (1:300, rabbit, Dako) were incubated overnight at 4°C in the same solution. Secondary antibodies were incubated in 2% horse serum for 2 hr at RT.
For analysis of local inflammation and pathology, paraffin sections of perfusion-fixed tissues were used. Sections were treated with primary antibodies diluted in PBS/BSA (1% w/v BSA) overnight at 4°C. Dilutions were as follows: GFAP (1:200, mouse, Novocastra), Mac3 (1:400, rat, BD PharMingen), and APP (1:1000, Millipore Cat# MAB348 RRID: AB_94882). Biotinylated secondary antibodies were then incubated for 30 min at RT, and chromogenic staining was completed using HRP-DAB detection.
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3

Western Blot Analysis of Alzheimer's Markers

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Immunoblots was performed as described previously [16 (link)]. Briefly, for Western blot analysis, samples (30 μg protein) were separated by SDS-polyacrylamide gel electrophoresis (PAGE) and were then transferred to polyvinylidene difluoride (PVDF) membranes. The primary antibodies used were as follows: mouse anti-GFAP antibody (GFAP, Millipore, MAB360, 2041104), mouse anti-APP antibody (Millipore, MAB348, 25030193), rabbit anti-CTF antibody (Millipore, AB5352, 22051154), rabbit anti-neprilysin (NEP) antibody (Millipore, AB5458, LV1423485), rabbit anti-IDE antibody (Millipore, AB9210, 2769024), mouse anti-β-actin antibody (Millipore, MAB, LV1460528) and goat anti-Iba-1 antibody (Abcam, ab5076, GR268568-3). The secondary antibodies were anti-rabbit IgG antibody conjugated with horseradish peroxidase (HRP; Jackson ImmunoResearch, 711-035-152) and anti-mouse IgG antibody conjugated with HRP (Jackson ImmunoResearch, 715-035-151). The immune complexes were detected using enhanced chemiluminescence reagents (GE Healthcare, Chicago, IL, USA). The images were obtained and quantified using a LAS-3000 Image Analyzer (Fujifilm, Tokyo, Japan).
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4

Imaging Hippocampal Amyloid Pathology

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The hippocampal sections were isolated and perfused with PBS and 0.2% Triton X-100 and then fixed in 4% paraformaldehyde for 24 h. The left brain sections were rapidly frozen under -50°C, followed by transversely cutting the tissue samples into 5 μm slices. The slices were then incubated at 4°C with anti-APP (1 : 200, MAB348, Millipore, USA) and BACE1 (1 : 300, ab183612, Abcam, USA) antibodies. After permeabilization and blocking overnight, appropriate secondary antibodies (ab150113, ab150115, Abcam, USA) were used at a dilution of 1 : 200. After washing three times with PBS, the sections were incubated with DAPI (C0065, Solarbio, China) for 10 min, followed by live imaging. The hippocampal images were captured and obtained with a confocal laser microscope (FV1000, Olympus, Japan) at 1000x magnification.
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5

Protein Expression and Phosphorylation Analysis

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ROCK1 Abcam ab45171; Actin Abcam ab6276; ROCK2 Abcam ab56661; LIMK1 Cell Signaling 3842; phospho-LIMK1 (Thr508)/LIMK2 (Thr505) Cell Signaling 3841; MUNC18 Abcam ab3451; APP (22C11) Millipore MAB348.
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6

Amyloid Pathology in Transgenic Mice

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15–24 month-old Eu and TcMAC21 mice (n = 6 each) were perfused with PBS, then a half brain was used to make lysate for western blot and ELISA, and the other half was fixed in 4% PFA. WesternBlot and ELISA: cortex and hippocampus were removed and lysed with RIPA buffer. Protein extracts were separated by 4–12% SDS-PAGE, transferred to PVDF membranes and then probed with APP antibody (Millipore, MAB348) and beta actin. For ELISA, the above lysate was spun at 16,000 g for 30 min at 4°C. Supernatant was analyzed to determine Aβ levels by human/rat β amyloid ELISA kit from Wako (Aβ40: Cat# 294–64701; Aβ42: Cat# 290–62601). Amyloid plaque staining: mouse brains were fixed by immersion in 4% PFA, embedded in paraffin, and sectioned at 5 µm. Sections were deparaffinized and protein antigenicity was unmasked, and then the endogenous peroxidase activity was inhibited with 1.5% hydrogen peroxide. Sections were incubated with mouse anti-β-amyloid (Covance, Cat# SIG-39320), biotinylated goat anti-mouse IgG, and Avidin/Biotin mixture and then developed in 3,3′-Diaminobenzidine (DAB).
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7

Antibody Validation for Neurodegenerative Markers

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The following commercially available antibodies were used: anti-pTau (AT8; pSer202, pThr205) and total Tau (Tau 5) from ThermoFisher (RRID:AB_223647 and 10980631), anti-synj1 (rabbit polyclonal Ab, Novus; RRID:AB_11047653), anti-β actin and tubulin (Santa Cruz; RRID:AB_476697 and 477498), anti-holoAPP (MAB348, Millipore; RRID:AB_94882), anti-GSK3β (rabbit monoclonal Ab, Cell Signaling; RRID:AB_490890), anti-pGSK3β (Ser9, inactive form of GSK3β, rabbit polyclonal Ab, Cell Signaling; RRID:AB_331405), anti-pGSK3β (Y216, active form of GSK3β, rabbit polyclonal Ab, Abcam; RRID:AB_1310290), anti-mouse and rabbit horse radish peroxidase, Texas-Red or Alexa488 conjugated anti-mouse IgG (ThermoFisher; RRID:AB_2556542, 2540618, 10374713, 10983944, 2535987 and 1090271), were purchased. The pAb369 antibody which recognizes the C-terminus of APP was used to detect mouse holo-APP and c-terminal fragments67 (link).
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8

Antibody Resources for Neurodegenerative Research

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Antibodies against full length APP (ab32136), BACE2 (ab8025), glucagon (ab10988), IDE (ab32216) and the insulin receptor (ab69508) were purchased from Abcam (Cambridge, UK). Antibodies against insulin (L6B10), p-GSK3β (D3A4), GSK3β (D5C5Z), p-AKT (193H12) and AKT (C67E7) were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). The monoclonal 4G8 antibody targeting the Aβ peptide used in these studies was purchased from Covance (Princeton, NJ, USA) and is now available from Biolegend (San Diego, CA, USA). Antibodies against the N-terminus of APP (MAB348), GLUT2 (07-1402), and GLUT4 (07-1404) were purchased from Millipore (Darmstadt, Germany). Antibodies against GLUT1 (sc-7903), GLUT3 (sc-7682), and ZNT8 (sc-98243) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA).The antibody for amylin (250470) was purchased from Abbiotec (San Diego, CA, USA). The antibody against human APP (803001) was purchased from Biolegend (San Diego, CA, USA). The antibody against Aβ oligomers (11610) was purchased from Cayman Chemical (Ann Arbor, MI, USA). The antibody against neprilysin (MAB1126) was purchased from R&D Systems (Minneapolis, MN, USA).
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9

Western Blot Analysis of Alzheimer's Biomarkers

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A total of 10 µg of total protein obtained from tissue lysates or 20 μL of eluate biotin-conjugated protein was separated on 8% SDS-PAGE gels and transferred to nitrocellulose membranes according to the standard Western blot procedure. After the transfer, the membranes were incubated in TBS-T buffer (Thermo Scientific, Schwerte, Germany) with 5% bovine serum albumin (Fraction V) (Sigma Aldrich, Darmstadt, Germany) at RT for 60 min. Then, incubation with primary antibodies for β-actin (Sigma Aldrich, Darmstadt, Germany, Cat# A5441, 1:10,000), Alzheimer precursor protein A4 (Millipore, Darmstadt, Germany, Cat# MAB348, 1:2000), glutamate transporter 1 (Millipore, Darmstadt, Germany, AB1783, 1:3000) and tau (Abcam, Cambridge, UK, Cat# ab32057, 1:2000) was performed. Incubation was carried out at RT for 2 h. Secondary horseradish peroxidase (HRP)-conjugated antibodies were incubated with membranes at RT for 1 h (Promega, Cat# W402B and Cat# W401B, both 1:5000; Millipore, Cat# AP108P, 1:10,000). Detection was performed using SuperSignal West Pico PLUS blotting substrate (Thermo Scientific, Schwerte, Germany) and the GeneGnome XRQ analysis system (SYNGENE, Cambridge, UK). The data were analyzed using GnomeSys 1.8.2.
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10

Immunoblotting Analysis of APP-CTFs

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Mouse brain tissues were homogenized in lysis buffer containing 50 mM tris (pH 7.6), 0.15 M NaCl, 1% Triton X-100, and cOmplete protease inhibitor cocktail (Roche Diagnostics) using a Multi-beads Shocker (Yasui Kikai). Homogenates were incubated at 4°C for 1 hour and centrifuged at 15,000 rpm for 30 min, and the supernatants were collected as loading samples. Concentrations of protein samples were measured with the aid of a bicinchoninic acid protein assay kit (Thermo Fisher Scientific). Equal amounts of proteins were subjected to SDS–polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes. For detection of APP-CTFs, delipidated samples were loaded onto membranes and boiled for 5 min in phosphate-buffered saline (PBS) before blocking with enhanced chemiluminesence (ECL) primer blocking buffer (GE Healthcare). Membranes were incubated at 4°C with primary antibodies against APP (MAB348, Millipore; 1:2000) or APP-CTFs (A8717, Sigma-Aldrich; 1:1000) with glyceraldehyde-3-phosphate dehydrogenase (HRP-60004, Proteintech; 1:150,000) as a loading control. Targeted proteins were visualized with ECL select (GE Healthcare) and a LAS-3000 Mini Lumino image analyzer (Fujifilm).
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