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24 protocols using fluorescence conjugated secondary antibody

1

NEAT1 Regulation of Tumor Growth

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Female BALB/c nude mice 4–5 weeks of age were purchased from the Shanghai Laboratory Animal Center at the Chinese Academy of Sciences. All experiments were performed in accordance with relevant institutional and national guidelines and the regulations of the Shanghai Medical Experimental Animal Care Commission. Mice (5 per group) were injected subcutaneously with 0.2 mL of a cell suspension containing 5 × 105 cells (the piLenti-shRNA-VECTOR and piLenti-shRNA-NEAT1 stable A2780 cell lines) in the right axilla. The tumor growth rates were monitored. When a tumor was palpable, it was measured every other day, and its volume was calculated according to the formula: volume = length × width2 × 0.5.
To investigate the relationship between NEAT1 and LIN28B in vivo, frozen sections from animal experimental tumors were washed with PBS and fixed with 4% paraformaldehyde for 20 min at room temperature. After three washes with PBS, the sections were blocked in 5% goat serum for 1 h. The cells were subsequently incubated with primary antibodies specific for Ki-67 (1:100, Proteintech) and LIN28B (1:50, Abcam; ab71415) overnight at 4 °C. The next day, the sections were washed with PBS and then incubated with fluorescence-conjugated secondary antibodies (Beyotime, China), followed by DAPI. Images were captured under a fluorescence microscope.
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2

Immunofluorescence Analysis of Cardiomyocytes

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For immunofluorescence analysis of NRCMs, cultured NRCMs were fixed with 4% paraformaldehyde for 15 minutes, permeabilized with 0.1% Triton X‐100 in PBS for 10 minutes, blocked with 3% BSA solution for 1 hour and incubated with an anti‐actin (α‐sarcomeric) antibody (Sigma‐Aldrich; 1:200) or a microtubule‐associated protein 1 light chain 3 (LC3) A/B antibody (Cell Signaling Technology; 1:200) overnight at 4°C. Then, the cells were washed and stained with fluorescence‐conjugated secondary antibodies (Beyotime Biotechnology; Alexa Fluor 647 or Alexa Fluor 488, respectively). Immunofluorescence was analysed with a Nikon A1 confocal microscope (Nikon Corporation), and the cell surface areas and numbers of LC3 puncta were measured using Image‐Pro Plus 6.0 software.
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3

Immunofluorescence Staining of Cell Markers

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For Immunofluorescence staining, cells were grown onto coverslips and fixed in 4% paraformaldehyde for 10 min, and blocked with in 0.05% Triton X-100 and 3% bovine serum albumin (BSA) for 30 min. The coverslips were incubated primary antibodies (N-cadherin (1:100; Abcam, Cambridge, United Kingdom), E-cadherin (1:100; Abcam, Cambridge, United Kingdom), acetylated smad4 (1:100; Proteintech, Wuhan, China)) overnight at 4 °C, followed by fluorescence-conjugated secondary antibodies (Beyotime) for 2 h at room temperature, and nuclei were stained with DAPI (Beyotime) for 5 min.
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4

Immunofluorescence Characterization of Cell Adhesion and Proliferation

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EC109 and EC9706 cells were seeded onto sterile coverslips (WHB‐24‐CS, diameter: 14 mm) at a density of 5 × 105 cells/coverslip and incubated for 4 h. Cells were then fixed with 4% formaldehyde and coverslips with fixed cells incubated overnight at 4°C with antibodies specific to E‐cadherin (1:100; Abcam), N‐cadherin (1:100; Abcam), Ki‐67 (1:100; Abcam) and MMP10 (1:100; Abcam). Fluorescence‐conjugated secondary antibodies (1:100; Beyotime) were used for 2 h at room temperature. DAPI (Beyotime, China) was used to stain the nuclei.3, 29
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5

Immunofluorescent Staining of H9C2 Cells

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H9C2 cells were plated in 35 mm dishes, washed with PBS and then fixed with 4% paraformaldehyde for 20 mins at room temperature. After being washed thrice with PBS, the H9C2 cells were blocked in 5% goat serum for 1 h. The cells were subsequently incubated with primary antibodies specific for Col1A1 (1:400, Abcam) overnight at 4°C. On the next day, the H9C2 cells were washed with PBS and incubated with fluorescence-conjugated secondary antibodies (Beyotime, China) followed by DAPI. Images were captured under a fluorescence microscope.
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6

Regulation of Epithelial-Mesenchymal Transition

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NCI-H292 cells were seeded on chamber slides in serum-free medium. Once the cells reached near 80% confluence, they were incubated with CSE (5%) or LL-37 synthetic peptide (5 µg/mL) with or without pretreatment with EGFR inhibitor AG1478, TGF-α neutralized antibodies, and TACE inhibitor TAPI-1. The slides were then washed in PBS and fixed in 4% paraformaldehyde for 20 min. Next, the cells were permeabilized with Triton X100 (1%) for 20 min and further incubated with corresponding primary antibodies overnight. The following antibodies were used at appropriate dilutions: anti-CRAMP (1:50), anti-E-cadherin (1:100), and anti-vimentin (1:100) (Abcam, Cambridge, USA). The slides were incubated with fluorescence-conjugated secondary antibodies (Beyotime, Shanghai, China) the next day for 1 h at room temperature. Images were taken using fluorescence microscopy (ECLIPSE C1, Nikon, Japan) with 200× magnification.
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7

Immunofluorescence Staining of SIRT-1 and PARP-1

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MCs on 35 mm glass dishes were treated as described previously.50 (link) The plates were washed with cold PBS and fixed with 4% paraformaldehyde for 20 min at room temperature. After permeabilizing with 0.3% of triton, the unspecific sites of the cells were blocked by 1% BSA + 0.3% triton. Then, the cells were incubated with primary antibody experimenters used before,35 (link) rabbit anti-SIRT-1 diluted 1:10 (Santa Cruz Biotechnology) and mouse anti-PARP-1 diluted 1:10 (Enzo Life Sciences, Farmingdale NY) overnight at 4°C and incubated with fluorescence conjugated secondary antibodies (Beyotime, China) counterstained with DAPI next day. Images were analyzed under a fluorescence-inverted microscope.
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8

Airway Remodeling Assessment in Mice

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The lung tissue collected from the mice experimental groups was fixed, cut into 4-µm sections, and stained with Masson’s trichrome staining to assess airway remodeling. Immunofluorescence assays were conducted as described in previous publications (22 (link)). Briefly, the slides were blocked with 5% bovine serum albumin (Sigma, Darmstadt, Germany) for 1 h at room temperature and then incubated with primary antibodies at 4 °C overnight. The following primary antibodies were used at the appropriate dilutions: anti-CRAMP (1:50), anti-E-cadherin (1:100), and anti-vimentin (1:100) (Abcam, Cambridge, USA). The slides were incubated the next day with fluorescence-conjugated secondary antibodies (Beyotime, Shanghai, China) for 1 h at room temperature. Then, the slides were examined and photographed using fluorescence microscopy (ECLIPSE C1, Nikon, Japan) with 40× magnification. The fluorescence intensities of CRAMP, E-cadherin, and vimentin were calculated using Image-Pro Plus 6.0 software and shown as IOD/area.
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9

Immunofluorescence Staining of Rat Kidney

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Rat kidneys were harvested, frozen in Tissue-Tek OCT media, and sliced sequentially into 10 μm sections using a cryostat. Sections were permeabilized with 0.1% Triton X-100 in phosphate-buffered saline (PBS) for 20 min and then blocked with 5% donkey serum for 1 h and incubated with rabbit anti-E-cadherin (1:100; 20874-1-AP; Proteintech) overnight at 4°C. Next, sections were incubated for 5 min with 4′,6-diamidino-2-phenylindole (DAPI) and then for 2 h with fluorescence-conjugated secondary antibodies (Beyotime, Shanghai, China) in a dark room at room temperature. Slices were visualized under a fluorescence microscope (Leica Microsystems, Germany).
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10

Immunofluorescence Analysis of Aorta Oxidation

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Aorta sections were permeabilized with 0.1% Triton X-100 in PBS for 20 min, blocked with 5% goat serum for 1 h, and incubated with antibodies overnight at 4°C. The tissue sections were then incubated for 5 minutes with 4′,6-diamidino-2-phenylindole (DAPI) and then for 1 h with fluorescence-conjugated secondary antibodies (Beyotime, Shanghai, China) in the dark at 37°C. Tissues were observed by fluorescence microscopy (Leica Microsystems, Germany). The antibodies used were 8-OHdG (1 : 200, bs-1278R, Bioss), NLRP3 (1 : 200, NBP2-12446, NOVUS), and GSDMD (1 : 200, NBP2-33422, NOVUS). Fluorescence intensity was quantified using the ImageJ 1.8 software.
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