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Astra 6 software

Manufactured by Wyatt Technology
Sourced in United States

The ASTRA VI software is a comprehensive data analysis solution designed for the characterization of macromolecules and nanoparticles. It provides a user-friendly interface for the analysis of data obtained from various light scattering techniques, including static light scattering, dynamic light scattering, and multi-angle light scattering.

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30 protocols using astra 6 software

1

Molecular Weight Characterization of Biopolymers

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The weight-average molecular weight (Mw), number-average molecular weight (Mn), and the polydispersity index (Ip = Mw/Mn) of the samples were determined by high-performance size exclusion chromatography (HPSEC) coupled with a multiangle light scattering detector (MALS, Dawn Heleos-II, Wyatt Technology) and a differential refractive index (RI) detector (Hitachi L2490). HPSEC system was composed of an HPLC system Prominence Shimadzu, a PL aquagel-OH mixed, 8 μm (Varian) guard column (U 7.5 mm ×  L 50 mm), and a PL aquagel-OH mixed (Varian) separation column (U 7.5 × 300 mm, operating range 102–107 g/mol). GY785 DR and GY785 DRS were dissolved in distilled water at a concentration of 2 mg/mL and filtered through 0.45 μm cellulose acetate syringe filter before being injected. The elution was performed at 1 mL/min rate with 0.1 M ammonium acetate containing 0.03% NaN3, filtered through 0.1 μm membrane (Durapore Membrane, PVDF, Hydrophilic type VVLP, Millipore). Data were computed with Astra software 6.1 (Wyatt Technology).
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2

Lipase Characterization by Multi-Angle Light Scattering

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Astra software 6.1 (Wyatt Technology) was used for the data analysis. The molecular weight of lipase–control sample was obtained from MALS and dRI detectors, applying the Zimm model [24 (link)] with a first order fit using 12 scattering angles (from 44.8° to 149.0°). The refractive index increment (dn/dc) used was 0.185 mL/mg [25 ], a generic protein value based on BSA. The second virial coefficient was assumed to be negligible.
dRI fractograms were used for lipase quantification, where the peak maximum was used to calculate the relative concentrations, normalized in relation to the lipase-control sample.
The Stokes–Einstein equation was applied to determine the hydrodynamic radius (rh),
rh=kT6πηD
where k is the Boltzmann constant, T is the absolute temperature, ƞ is dynamic viscosity of the solvent, and D is the translational diffusion coefficient, using the FFFhydRad 2.1 MATLAB App [26 (link)]. The channel thickness (w) was 286.4 µm, determined using BSA with a hydrodynamic diameter of 6.6 nm. The void time (t0) was calculated according to Wahlund and Nilsson, 2012.
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3

Lipase Molecular Weight Determination

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The data analysis was performed using Astra software 6.1 (Wyatt Technology). The molecular weight of lipase in the positive control was determined by the Zimm model [24 ] with a 1st order fit using 14 scattering angles, from 34.8° to 163.3°. The UV extinction coefficient used was 1.4 ml/(mg cm) and a refractive index increment (dn/dc) of 0.185 ml/mg [25 ]. As the dn/dc used is for a generic protein (BSA), the molecular weights reported for lipase are somewhat apparent. The second virial coefficient was considered negligible.
Once the lipase peak was identified, its retention time was used as reference for the rest of the samples, where only the UV detector was taken into consideration in order to calculate the free lipase in solution after its interaction with the respective flavonoid. For this, peak maximum was used for relative concentration that was normalized with respect to the control sample (containing only lipase).
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4

Biophysical Characterization of Lipases

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Astra software 6.1 (Wyatt Technology Europe) was used for the data analysis. For the molecular weight (Mw) of BlLyp, the value was determined at pH 6 using 13 scattering angles, from 42.8° to 163.3°. The calculations were performed with 1st order Zimm model (Zimm, 1948 (link)). The dn/dc value used was 0.185 mL/mg and the UV extinction coefficient 0.863 mL/(mg cm). The second virial coefficient was considered negligible. For both lipases, the hydrodynamic radius (rh) was estimated by the Stokes-Einstein equation using FFhydRad 2.1-MATLAB Apps (Håkansson et al., 2012 (link)) for the calculations. The channel thickness (w) for LrLyp and for BlLyp was determined using BSA as a standard.
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5

Antibodies and HER2 ECD Interaction

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Antibodies and HER2 ECD (EMP Genetech) were complexed in PBS at 4 °C for 1 h at indicated molar ratios. Ten microliter thereof were injected and eluted from a BEH500 size exclusion column (Waters) attached to a 1260 Infinity II LC System (Agilent) with a flow rate of 0.3 ml/min and ultimately investigated with a µDAWN detector (Wyatt). Data analysis was carried out with the ASTRA software 6.1 (Wyatt).
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6

Size-Exclusion Chromatography Analysis of Actoxumab-Toxin Binding

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Actoxumab was mixed with TcdA at molar ratios of 1:1 or 5:1 (Ab:toxin) or with construct A1 at molar ratios of 1:1, 2:1, 5:1, or 1:5. Actoxumab-Fab was mixed with TcdA at molar ratios (Fab:toxin) of 1:1, 2:1, 5:1, or 10:1. The mixtures were first incubated at RT for 45 min and then for 2 h at 4 °C in PBS. The final concentrations of actoxumab or actoxumab-Fab were kept constant at 0.17 mg/mL and 0.19 mg/mL, respectively. SEC-MALLS was performed using the Dawn Heleos-II 18 angle light scattering detector and Optilab T-rEX refractive index detector (Wyatt Technology). Samples were separated on a YMC-pack Diol 200 column (300 × 8 mm, 5 pm) on an Agilent 1200 system at RT with a mobile phase of PBS, a flow rate of 0.5 mL/min, and a running time of 30 min. Absorption of UV light at 280 nm and 214 nm was recorded. Light scattering and refractive index signals were collected and molecular masses of detected components calculated using the ASTRA VI software (Wyatt Technology).
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7

SEC-MALS Analysis of KRAS4b-FMe/CaM Complex

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Size exclusion chromatography with multiangle light scattering (SEC-MALS) data were collected using an Agilent 1260 HPLC system (Agilent Technologies, Santa Clara, CA), attached to a WYATT DAWN HELEOS-II MALS instrument and a Wyatt Optilab rEX differential refractometer (Wyatt Technology, Santa Barbara, CA). For separation, the KRAS4b-FMe/CaM complex was loaded onto a superdex 200 10/300 column (GE Healthcare) in a buffer containing 20 mM Hepes (pH 7.2), 150 mM NaCl, 1 mM CaCl2, 1 mM MgCl2, and 1 mM TCEP. Data were analyzed using the ASTRA VI software (Wyatt Technology).
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8

Multi-Angle Light Scattering Analysis

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MALS analysis was performed with WTC-050S5 (Wyatt Technology, Santa Barbara, CA) or KW-804 (Shodex, New York, NY) size exclusion columns on an Ettan liquid chromatography system (GE Healthcare Life Science) with inline DAWN HELEOS MALS and Optilab rEX differential refractive index detectors (Wyatt Technology). Data were analyzed using ASTRA VI software (Wyatt Technology). Size exclusion chromatography was performed with HB150 or HB250 with 5 mM DTT. Analytical size exclusion was performed on the Ettan liquid chromatography system with Superdex 200 PC 3.2/30 column (GE Healthcare Life Science) with a flow rate of 40 μl/min.
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9

Analytical SEC and SEC-MALS of Protein-RNA

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Analytical SEC was performed in buffer M (250 mM NaCl, 20 mM HEPES pH 7.0, 1 mM DTT), or in the appropriate NaCl concentration. Samples were mixed at ∼30 µM and incubated for 15 min in 350 mM NaCl, 20 mM HEPES pH 7.0, 1 mM DTT on ice before being filtered and injected onto a GE Superdex 200 10/300-Increase analytical size exclusion column. When appropriate, samples were mixed with 1.1-fold molar excess RNA. All samples were run at 0.35 mL/min, and peaks were analyzed by SDS-PAGE (Invitrogen). For experiments involving reinjection of fractions over SEC, 500 µL of fractions were spin filtered before reinjecting over SEC.
For SEC-MALS, 165 µg of sample was filtered through a 0.1 µm spin filter (Amicon) before being injected onto a preequilibrated KW-804 column (Shodex). For samples with RNA, stoichiometric amounts of RNA were added prior to spin filtration. Data was acquired with an inline DAWN HELEOS MALS and Optilab rEX differential refractive index detector (Wyatt Technology). All analysis was performed using ASTRA VI software (Wyatt Technology). Data was then exported and plotted with R.
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10

SEC-MALS Analysis of PML RING Mutants

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The purified PML RING1–119 and mutants were subjected to gel filtration analysis (S100 column, GE Healthcare). The elution peaks, as monitored by UV absorption at 280 nm, were pooled separately and chosen for size exclusion chromatography-multi-angle light scattering (SEC-MALS) characterization, respectively. In brief, the purified protein samples were concentrated and analyzed using a WTC-015S5 sized exclusion column (Wyatt Technology) which was connected to a 1260 infinity liquid chromatography system (Agilent Technology) equipped with inline DAWN HELEOS-II MALS and Optilab rEX differential refractive index detectors (Wyatt Technology). For each sample, a 40 μl injection volume and 0.5 ml min−1 flow rate were applied. Data were recorded and processed using ASTRA VI software (Wyatt Technology).
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