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Sybr green qpcr pre mix

Manufactured by Enzynomics
Sourced in United States

SYBR Green qPCR Pre-Mix is a ready-to-use solution containing SYBR Green I dye, DNA polymerase, dNTPs, and other necessary components for real-time quantitative PCR amplification.

Automatically generated - may contain errors

8 protocols using sybr green qpcr pre mix

1

Quantifying Tumor-Induced Macrophage mRNA

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Total RNA was extracted from the tumor, and tumor explant supernatant (TES) educated macrophages using TRIzol reagent (Invitrogen) according to the manufacturer’s instructions. cDNA was reverse transcribed from 1 mg of total RNA, and the amount of mRNA was determined by real-time PCR using the SYBR Green qPCR Pre-Mix (Enzynomics). All samples were normalized to the 18S rRNA mRNA expression levels. The primer sequences are listed in Additional file 3: Table S1.
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2

Quantitative PCR Analysis Protocol

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The quantitative PCR analysis was performed with QuantStudio 6 Flex System Applied Biosystem (Carlsbad, CA, USA). Table 2 lists the primer sequences used for qRT-PCR. The PCR mixture contains cDNA (2 μg), SYBR green qPCR PreMIX (Enzynomics, Seoul, Korea) primers, and ultrapure RNase free water. PCR reactions were subjected to 45 cycles of 95 °C for 15 min, 95 °C for 15 s, and 60 °C for 1 min. The relative mRNA expression levels were normalized to glyceraldehyde-3-phosphate dehydrogenase (GAPDH), which was used as an internal control.
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3

Gene Expression Analysis by qPCR

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Total
RNA was extracted using the TRIzol reagent (Invitrogen) according
to the manufacturer’s instructions. cDNA was synthesized from
1 μg of total RNA using reverse transcription, and the amount
of mRNA was determined using real-time PCR analysis with the SYBR
Green qPCR Pre-Mix (Enzynomics, Daejeon, South Korea) on an ABI real-time
PCR 7500 machine (Applied Biosystems, CA, USA). Gene expression was
normalized to housekeeping gene 18sRNA. Primer sequences were as follows:
CD206 (forward: 5- AATGAAGATCAAGCGCTGC-3;
reverse: 5-TGACACCCAGCGGAATTTCT-3); and 18sRNA
(forward: 5-GCAATTATTCCCCATGAACG-3; reverse:
5-GGCCTCACTAAACCATCCAA-3).
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4

Extraction and Characterization of β-Glucan from P. baumii

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The β-glucan fraction (BGF) was obtained from the carpophores of P. baumii as described previously [16 (link)]. Briefly, dried and powdered carpophores were extracted with distilled water at 100 °C for 10 h. The filtered extract was concentrated in vacuo, and three volumes of ethanol were added at 4 °C for 4 h to precipitate the crude BGF. The crude BGF was purified by passing through a Sephacryl S-400 HR column (Sigma-Aldrich, St. Louis, MO, USA) and BGF was obtained as a strong single band. The β-glucan content in the BGF was 84% by analysis with a mushroom and yeast assay kit (Megazyme, Bray, Ireland). β-Glucans of yeast zymosan A from Saccharomyces cerevisiae and barley were obtained from Sigma-Aldrich. Mouse diets containing 1% normal and 10% high-salt were obtained from Samtako (Osan, Korea).
The polymerase chain reaction (PCR) primers for corin and GAPDH were synthesized by Cosmogenetech (Seoul, Korea). The forward and reverse primer sequences (5′→3′) of corin were 5′GTC CGC ATT ATT CCT CTG GA3′ and 5′ CAA ACC AGA GGA CCA CCA CT3′, respectively. Those of GAPDH were 5′ ACC GCA GCT AGG AAT AAT GGA ATA 3′ and 5′ CTT TCG CTC TGG TCC GTC TT 3′, respectively. Oligo deoxythymine, 5X reaction buffer, Moloney murine leukemia virus (M-MLV) reverse transcriptase, and SYBR green qPCR PreMIX were obtained from Enzynomics (Daejeon, Korea).
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5

Quantification of mRNA and miRNA Levels

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Total mRNA was obtained from HUVECs or lung endothelial cells using TRIzol reagent (Thermo-Fisher Scientific, Waltham, MA, USA) following the manufacturer’s protocols. After measuring the mRNA concentration, cDNA or miRNA was generated using cDNA synthesis master mix (CellSafe, Yongin, Republic of Korea) or the miScript kit (Qiagen, Hilden, Germany), respectively, according to the manufacturer’s instructions. The StepOnePlus Real-Time PCR system (Applied Biosystems, Foster City, CA, USA) with SYBR green qPCR premix (Enzynomics, Daejeon, Republic of Korea) was used for the analysis. See Supplementary Table S1 for the primer sequences used for quantification. IDH2 and β-actin primers were purchased from Bioneer. β-Actin or RNU6 was used as an internal control, and relative expression was calculated using the 2−Δ/ΔCt method.
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6

Quantitative Real-Time PCR Analysis

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For quantitative real-time PCR analysis, total RNA was solubilized in TRIzol reagent (Invitrogen) and extracted according to the manufacturer’s instructions. cDNA was synthesized from 1 μg of total RNA using reverse transcription, and the amount of mRNA was determined using real-time PCR analysis with the SYBR Green qPCR premix (Enzynomics, Daejeon, South Korea) on an ABI real-time PCR 7500 machine (Applied Biosystems, CA, USA). The primer sequences were as follows: human IL-6 forward, 5-AAATTCGGTACATCCTCGAC-3; human IL-6 reverse, 5-CAGGAACTGGATCAGGACTT-3; human β-actin forward, 5-ATTGCCGACAGGATGCAGAA-3; and human β-actin reverse, 5 -GCTGATCCACATCTGCTGGAA-3.
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7

Quantitative RT-PCR Analysis of Gene Expression

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For qPCR analysis, total RNA was solubilized in TRIzol reagent (Invitrogen) and extracted according to the manufacturer’s instructions. cDNA was synthesized from 1 mg of total RNA using reverse transcription, and the amount of mRNA was determined using real-time PCR analysis with the SYBR Green qPCR Pre Mix (Enzynomics) on an ABI real-time PCR 7500 machine (Applied Biosystems). Samples were normalized to TBP or 18S ribosomal RNA. The primer sequences are described in Supplementary Table S1.
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8

Quantifying gene expression by RT-qPCR

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Total RNA was extracted using TRIzol reagent (Invitrogen) according to the manufacturer's instructions. cDNA was synthesized from 1 μg of total RNA using reverse transcription, and the amount of mRNA was quantified using real-time PCR analysis with SYBR Green qPCR Pre-Mix (Enzynomics, Daejeon, South Korea) on an ABI real-time PCR 7500 machine (Applied Biosystems, CA, USA). Gene expression was normalized to housekeeping gene 18sRNA. Primer sequences are listed in Table S2.
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