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9 protocols using plenti pgk v5 luc neo

1

Establishment and Maintenance of Murine Breast Cancer Cell Lines

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The 4T1 and E0771 tumor cell lines were purchased from the American Type Culture Collection (ATCC) and CH3 BioSystems, respectively. The AT-3 cell line was gift from Dr. Scott Abrams (Roswell Park). Tumor cells expressing luciferase (4T1-luc, E0771-luc, and AT-3-luc) were generated with infection of lentiviruses encoding luciferase (pLenti PGK V5-LUC Neo, Addgene plasmid #21471). 4T1 and E0771 cells were cultured in RPMI 1640 (Gibco) supplemented with 10% fetal bovine serum (FBS) (Sigma-Aldrich), 1% Non-Essential Amino Acid (NEAA) (Gibco), 2 mM L-glutamine (Gibco), 0.5% penicillin/streptomycin (Gibco), and 55 μM 2-mercaptoethanol (Gibco). AT-3 and AT-3-luc cells were cultured in DMEM (Gibco) supplemented with 10% FBS, 1% NEAA, 2 mM L-glutamine, 0.5% penicillin/streptomycin, and 55 μM 2-mercaptoethanol. These cell lines were authenticated by morphology, phenotype and growth, and routinely screened for Mycoplasma, and were maintained at 37°C in a humidified 5% (4T1 and E0771) or 7% (AT-3) CO2 atmosphere.
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2

PTPN11 Variant Cloning and Lentiviral Transduction

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Human embryonic kidney 293 cells were cultured in DMEM 10% fetal bovine serum as per the manufacturer’s instructions. PTPN11 was sequenced in cell lines to verify wild-type sequences. Human PTPN11WT (NM_002834.5), PTPN11G1282C, PTPN11G1381A, and PTPN11C1403T cDNAs were synthesized and cloned into a pcDNA3.1+ N-HA plasmid, fused in frame at their N-terminus with an HA tag (Genscript Biotech, Piscataway, NJ). Luciferase ORF was excised from pLenti PGK V5-LUC Neo (21471, Addgene, Watertown, MA) by SalI and XbaI combined restriction digestion, and HA-tagged PTPN11 cDNAs were amplified and cloned into the digested pLenti-vector using the In-Fusion HD Cloning kit (638947, Takara Bio, Shiga, Japan), following the on-line primer design tool and the manufacturer's instructions.
Transduction of human embryonic kidney 293T cells with pLenti PGK PTPN11WT, PTPN11G1282C, PTPN11G1381A, or PTPN11C1403T was done in addition to pCMV-VSVG and delta-8.2 (Addgene) lentiviral plasmids using Lipofectamine 2000‒generated lentiviral particles used to infect human embryonic kidney 293 target cells using 8 μg/ml polybrene to enhance efficiency. Stable cell lines were selected using G418. All variants were verified in cell lines with Sanger Sequencing.
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3

Stable Luciferase-expressing B16-F10 Cells

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Stable expression of the firefly luciferase gene (Luc) was obtained by the lentiviral transduction of B16-F10 cells. Briefly, lentiviruses (LVs) were produced in HEK293 cells transfected using polyethyleneimine (MW, Polysciences Inc., Warrington, PA, USA) with plasmids pMD2.G, psPAX2, and pLenti PGK V5-Luc Neo (all from Addgene, Watertown, NY, USA). Medium with LVs was collected 48 h after transfection, filtered (0.45 μm PVDF filter), and used for infection of B16-F10 cells. After 48 h, successfully transduced cells were selected in RPMI CM supplemented with 0.8 mg/mL G418 (CytoGen GmbH, Wetzlar, Germany).
For stable HO-1 overexpression, B16-F10 Luc cells were transduced with retroviral vectors (RVs) harboring HO-1 transgene. RVs were produced in Phoenix-Ampho transfected using polyethyleneimine (MW, Polysciences Inc., Warrington, PA, USA) with packaging plasmid M13 and pBABE-Puro-HO-1 plasmid (HO-1 transgene cloned into the pBABE-Puro plasmid from Addgene). Transduced B16-F10 HO-1 Luc cells were selected using 2 μg/mL puromycin (Sigma-Aldrich, Saint Louis, MO, USA). In some experiments, we used the B16-F10 HO-1 GFP-Luc cell line that was generated in our previous study [46 (link)].
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4

Establishment and Characterization of AT-3 Mammary Tumor Cell Line

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The AT-3 tumor cell line was established from a primary mammary gland carcinoma of the PyMT-MMTV transgenic mice on a B6 strain and was maintained as described31 (link). AT-3 cells were cultured in Gibco Dulbecco’s Modified Eagle Medium supplemented with 10% fetal bovine serum (FBS) (Sigma), 1% non-essential amino acid (NEAA) (Gibco), 2 mM l-glutamine (Gibco), 0.5% penicillin/streptomycin (Gibco), and 55 μM 2-mercaptoethanol (Gibco). AT-3 tumor cells expressing luciferase (AT-3-luc) were generated with infection of lentiviruses encoding luciferase (pLenti PGK V5-LUC Neo, Addgene plasmid #21471). These cell lines were authenticated by morphology, phenotype, and growth, and routinely screened for Mycoplasma, and were maintained at 37 °C in a humidified 7% CO2 atmosphere.
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5

Murine Cancer Cell Line Establishment and Maintenance

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The AT-3 tumor cell line was established from a primary mammary gland carcinoma of the PyMT-MMTV transgenic mice on a B6 strain and was maintained as described66 (link). The 4T1 breast cancer and B16-F10 (B16) melanoma cell lines were purchased from the American Type Culture Collection (ATCC), authenticated at ATCC, and maintained. The MC38 colon adenocarcinoma cell line was gift from Dr. Weiping Zou (University of Michigan). AT-3 cells were cultured in DMEM (Gibco) supplemented with 10% fetal bovine serum (FBS) (Sigma), 1% NEAA (Gibco), 2 mM l-glutamine (Gibco), 0.5% penicillin/streptomycin (Gibco), and 55 μM 2-mercaptoethanol (Gibco). 4T1, MC38, and B16 cells were cultured in RPMI (Gibco) supplemented with 10% FBS, 1% NEAA, 2 mM l-glutamine, 0.5% penicillin/streptomycin, and 55 μM 2-mercaptoethanol. For generation of mouse AT-3 cells expressing GFP (AT-3-GFP), AT-3 cells were infected with retroviruses encoding GFP (mEGFP-N1, Addgene plasmid #54767 a gift from Dr. Michael Davidson). 4T1 cell expressing Luciferase (4T1-luc) were generated with infection of lentiviruses encoding Luciferase (pLenti PGK V5-LUC Neo, Addgene plasmid #21471). These cell lines were authenticated by morphology, phenotype, and growth, and routinely screened for Mycoplasma, and were maintained at 37 °C in a humidified 5% CO2 atmosphere.
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6

Murine Lewis Lung Carcinoma Cell Culture

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Murine Lewis lung carcinoma (LLC) cells were purchased from ATCC® (American Type Culture Collection, Manassas, VA, USA) and cultured in either T-75 or T-175 flasks. Cells were passaged for subculturing by first aspirating the culture medium with a pipette, rinsing with 1× phosphate buffered saline (PBS, Thermo Fisher Scientific, Waltham, MA, USA, SH30256FS), aspirating off the PBS, then rinsing with 0.25% trypsin-0.53 mM EDTA solution (Thermo Fisher Scientific, Waltham, MA, USA, 25-200-056), and then they were neutralized with complete growth media consisting of Dulbecco’s modified Eagle’s medium (DMEM, ATCC®, Manassas, VA, USA) with 10% fetal bovine serum (FBS, USDA approved, ATCC®, Manassas, VA, USA), and 1% Penicillin-Streptomycin (10,000 U/mL, Thermo Fisher Scientific, Waltham, MA, USA). Cells were modified to be luciferase-expressing (LLC-Luc), as previously described [54 (link)] through use of plasmid pLenti PGK V5-LUC Neo [63 (link)] (Addgene, Cambridge, MA, USA) which was packaged in lentiviral particles and performed at the Baylor College of Medicine (BCM) vector core facility. For the luciferase-expressing cells, 1% Geneticin (Thermo Fisher Scientific, Waltham, MA, USA) was added to the media to maintain culture. Cells were maintained in a HERAcell 150i CO2 incubator (Thermo Fisher Scientific, Waltham, MA, USA) set to 37 °C and 5% humidity.
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7

Orthotopic Injection of DIPG Neurospheres

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This procedure was carried out as described (9 (link)). Briefly, we prepared a single-cell suspension of luciferase-transduced SU-DIPG-XIII-luc neurospheres (pLenti PGK V5-LUC Neo (w623-2); Addgene, plasmid #21471), and injected 105 cells (50,000 cells/μL) into the fourth ventricle/pons of immunocompromised NOD-SCID-gamma (NSG) (strain 005557; The Jackson Laboratory), cold-anesthetized, P3 mouse pups through a 30-gauge burr hole (stereotactic coordinates: 3 mm posterior to the lambda suture and 3 mm deep).
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8

Firefly Luciferase-Expressing F98 GBM Cells

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F98 GBM cells (kindly provided by Prof. C. Vanhove, Ghent University, Belgium) were cultured in DMEM (Dulbecco’s modified eagle medium) supplemented with 10% fetal bovine serum (Sigma-Aldrich, Zwijndrecht, Netherlands). Cells were transduced with a lentiviral vector harboring a PGK-driven FLuc+ (pLenti PGK V5-LUC neo (w623-2), a gift from Eric Campeau (Addgene plasmid #21471; http://n2t.net/addgene:21471; RRID:Addgene_21471)) [40 (link)]. Neomycin selection began 48 h after transduction and after three weeks of continuous selection, cells could be used in experiments. Cells were tested for the presence of mycoplasma prior to injection into animals.
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9

Establishment of Stable Osteosarcoma Cell Lines

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The human osteosarcoma cell lines -143B, SJSA1, SAOS2, U2OS and MG63 (CLS Cat# 300441) -were purchased from ATCC. 143B and MG63 cells were maintained in Minimum Essential medium (MEM) (GIBCO). SAOS2 and U2OS cells were maintained in McCoy's 5A medium. SJSA1 cells were maintained in RPMI-1640 medium. All media were supplemented with 10% fetal bovine serum (FBS) (GIBCO) and 1% penicillin and streptomycin (GIBCO).
Stable cell lines of LG34C or LGS were established by sequentially infecting lentivirus expressing luciferase followed by lentivirus expressing either miR-34c-GFP or SCR-GFP in 143B parental cells. In brief, the pLenti PGK V5-LUC Neo (Addgene plasmid # 21471) was obtained from Addgene (30, 31) . The pGIPZ was purchased from Open Biosystems (vector # RHS4346). A 370 bp fragment of genomic DNA containing miRNA miR-34c was cloned into the Xho I and Mlu I restriction sites of the pLKO.1 vector (Addgene plasmid #52920) to express miR-34c (32) . The non-silencing control of the pGIPZ vector served as the scramble control.
Neomycin (125 mg/ml) and puromycin (1 µg/ml) were treated for the bulk selection. Further single clone from each cell line with a similar level of luciferase intensity was expanded to establish stable single clonal cell line of LG34C or LGS.
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