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15 protocols using ccnd2

1

Western Blotting Antibody Deployment

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The following antibodies were used for the western blotting: MYC (Cell signaling 5605S, 1:1000 dilution), γ-tubulin (Sigma T-5326, 1:2000 dilution), Flag-HRP (Sigma A8592, 1:1000 dilution), GST-HRP (Sigma A7340, 1:1000 dilution), MKK3 (Santa Cruz sc-961, 1:1000 dilution), MYC (Cell signaling 5605S, 1:1000 dilution), GAPDH (Cell Signaling 2118, 1:1000 dilution), CDKN1B (p27, Cell Signaling 2552, 1:1000 dilution), CCND2 (Cell Signaling 3741P, 1:1000 dilution), CDK4 (Santa Cruz sc-260, 1:1000 dilution).
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2

Protein Expression Analysis by Western Blot

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Tissue and cellular proteins were extracted with radioimmunoprecipitation assay buffer (Beyotime, Jiangsu, China) mixed with phenyl-methylsulfonyl fluoride (PMSF), and quantified with BCA protein assay kit (Beyotime, Jiangsu, China). Equal amount of proteins were loaded and analyzed by 10% SDS-PAGE gels. The isolated proteins were transferred to PVDF membranes (Bio-Rad, CA, USA). After blocking with 5% fat-free milk, the membranes were incubated with primary antibodies against MYC (1:1000), FUBP1 (1:1000), FIR (1:1000), nm23-H1(1:1000), MMP2 (1:1000), MMP9 (1:1000), CDK4 (1:1000), CCND2 (1:1000), CCND1 (1:1000), CCNE1 (1:1000), Bcl-2 (1:1000), Bax (1:1000) and cleaved Caspase-3 (1:1000) (Cell Signaling Technology, Beverly, MA, USA) overnight at 4 °C. The membranes were washed by TBST, and then incubated with goat anti-rabbit secondary antibodies (Thermo Fisher Scientific, USA) for 2 h. Finally, the bands were illuminated with Pierce ECL (Thermo Fisher Scientific, USA).
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3

IHC Analysis of Cell Cycle Markers

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For IHC assay, tissues were fixed with 4% paraformaldehyde and embedded in paraffin, then cutted into slices. Primary antibodies against MYC (1:8000, Proteintech,USA), CDK4 (1:8000, Proteintech, USA), CCND2 (1:200, Cell Signaling Technology, Beverly, MA, USA) and Ki-67 (1:8000, Proteintech,USA) were used. HRP-labeled streptavidin solution was added into the samples for 15 min after both primary and secondary antibody incubations. The immunocomplex was visualized with DAB, and the nucleus were counterstained with haematoxylin. Pictures were taken with a microscope (Leica, Wetzlar, Germany).
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4

Protein Extraction and Western Blotting

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Frozen heart tissues were lysed in cold RIPA buffer with protease inhibitor (Sigma, 4693116001) and were homogenized with prechilled TissueLyser (Qiagen, 25/s, 2 mins, 3 cycles) by adding metal beads. After centrifuge, supernatants were collected to detect proteins with small molecular weight like Yy1, Ccnd1 and Ccnd2. 20 µg of each sample was loaded into SDS-page gel and further transfer to nitrocellulose membrane (0.2 µm, Biorad, 162-0112) for blotting. Primary antibody including: Yy1 (Thermofisher, PA5-29171), Ccnd1 (Abcam, ab16663), Ccnd2 (Cell Signaling Technology. Inc, 3741), and Lamin B1 (Abcam, ab16048). Secondary antibody including: Donkey anti-Rabbit IgG (H + L) Highly Cross-Adsorbed Secondary Antibody (Thermofisher, A16035).
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5

Western Blot Analysis of Cell Cycle Regulators

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At 72 h after transfection, aliquots of 5 × 106 cells were lysed in RIPA buffer (Beyotime Institute of Biotechnology, China), and the lysate was determined using a BCA Protein Assay Kit (Beyotime, Shanghai, China). A total of 30 μg protein per lane was resolved by 10% SDS-PAGE and transferred to a PVDF membrane (Merck Millipore, USA). The membrane was blocked with 5% non-fat milk and then incubated overnight with primary antibodies against β-actin (Sigma-Aldrich, St. Louis, Missouri, USA), CDK-4 (Cell Signaling Technology, USA), CCND1 (Cell Signaling Technology, USA), or CCND2 (Cell Signaling Technology, USA). The membrane was washed in TBST and incubated with the secondary goat anti-mouse IgG antibody (Beyotime Institute of Biotechnology, Shanghai, China). An enhanced chemiluminescence kit (Pierce, Rockford, IL, USA) was used to detect the protein bands using a FluorChem E System (ProteinSimple, CA, USA).
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6

Protein Expression and Quantification

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The cells were lysed using the mammalian protein extraction reagent RIPA (Beyotime, Beijing, China). Approximately a 50 μg protein extraction was separated by 10% SDS-PAGE, transferred to 0.22 mm nitrocellulose (NC) membrane (Sigma), and incubated with specific antibodies. Autoradiograms were quantified by densitometry using Quantity One software (Bio-Rad, CA, USA). β-actin (diluted 1:1000) antibody was used as a control and rabbit anti-FBXW7 (1:1000 dilution), p14 (1:100 dilution), p16 (1:100 dilution), p21 (1:150 dilution), p27 (1:50 dilution), CDK2 (1:200 dilution), CDK4 (1:100 dilution), CDK6 (1:100 dilution), c-myc (1:150 dilution), CCND1 (1:100 dilution), CCND2 (1:150 dilution), CCND3 (1:100 dilution), CCNE1 (1:150 dilution), CCNE2 (1:50 dilution) were provided by Cell Signaling Technology (MA, USA).
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7

Western Blot Analysis of Cell Cycle Proteins

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The proteins extracted from the cell lysates were loaded with 50 µg in each lane, which was further separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). The membranes were probed with antibodies against CCND1 (no. 3300; dilution, 1:1,000), CCND2 (no. 3741; dilution, 1:1,000), CDK2 (no. 2546; dilution, 1:1,000), and CCNE2 (no. 4132; dilution: 1:1,000) (Cell Signaling Technology, Beverly, MA, USA) overnight at 4°C, and then incubated with horseradish peroxidase-conjugated secondary antibodies (no. 7071; dilution, 1:3,000) (Cell Signaling Technology) for 1 h at room temperature. Immune complexes were detected by enhanced chemiluminescence (Cell Signaling Technology). α-tubulin (no. 12351; dilution, 1:1,000) (Cell Signaling Technology) was used to correct for differences in protein loading from the control and experimental groups.
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8

Protein Expression Analysis by SDS-PAGE

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Proteins from the total cell lysates were separated by 10% SDS-PAGE and probed with different primary antibodies against MCL-1, CCND2, and GAPDH (Cell Signaling Technology, MA, USA).
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9

Western Blotting Antibody Deployment

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The following antibodies were used for the western blotting: MYC (Cell signaling 5605S, 1:1000 dilution), γ-tubulin (Sigma T-5326, 1:2000 dilution), Flag-HRP (Sigma A8592, 1:1000 dilution), GST-HRP (Sigma A7340, 1:1000 dilution), MKK3 (Santa Cruz sc-961, 1:1000 dilution), MYC (Cell signaling 5605S, 1:1000 dilution), GAPDH (Cell Signaling 2118, 1:1000 dilution), CDKN1B (p27, Cell Signaling 2552, 1:1000 dilution), CCND2 (Cell Signaling 3741P, 1:1000 dilution), CDK4 (Santa Cruz sc-260, 1:1000 dilution).
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10

Subcellular Fractionation and Western Blotting

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Nuclear and cytoplasmic fractions were isolated using NE-PER ® Nuclear and Cytoplasmic Extraction Reagents (Thermo Scientific, Rockford, IL, USA). Western blotting was carried out by standard procedures as previously described. [13 (link)] The primary antibodies used for the assay were as follows: anti-human SEMA3F (1:1000) (Chemicon, Temecula, CA, USA), anti-human MST2, MST1, MOB1, p-MOB 1, LATS1/2, YAP/TAZ, cleaved caspase-3, BCL2, p-YAP Ser397, p-YAP Ser127, and CCND2 (1:500) (Cell Signaling Technology, Danvers, MA, USA), anti-human β-actin (1:1000) (Cell Signaling Technology), anti-human CD20 (1:1000) (Abcam Cambridge, MA, USA), anti-human TAZ (1:1000) (Abcam), and anti-human Lamin B1 (1:1000) (Novus Biologicals, Littleton, CO, USA).
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