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7 protocols using clarity ecl western blot substrate kit

1

Characterization of PVP-Coated Silver Nanoparticles

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All solvents and chemicals were of analytical grade. Pure PVP-coated AgNP (5 nm) were obtained from nanoComposix (San Diego, CA). Ultrapure deionized water was obtained by an Arium® pro system (Sartorius, Goettingen, DE), TraceSELECT™ nitric acid (≥ 65% v/v) (Honeywell Fluka, Fisher Scientific, Waltham, MA, USA), TraceSELECT™ hydrochloric acid (30–32% v/v) (Honeywell Fluka) and Primar™ hydrogen peroxide (≥ 30–32% v/v) (Fisher Chemical, Loughborough, UK) were used throughout. Proteases inhibitor cocktail (Mini Complete™, Roche), phosphatases inhibitor cocktail (PhosSTOP, Roche), phosphate-buffered saline (PBS), hematoxylin (Mayer’s solution), and eosin were obtained from Merck (Darmstadt, DE). The commercial BD™ Cytometric Bead Array (CBA) Mouse Inflammatory Cytokines Kit was obtained from BD Biosciences (San Diego, CA, USA). Primary antibodies targeting IкBα and phospho-IкBα were obtained from Cell Signaling (Danvers, MA, USA) and anti-mouse IgG, HRP-conjugated, secondary antibodies were obtained from Santa Cruz Biotechnologies (Santa Cruz, CA, USA). DC™ Protein Assay kit II and Clarity ECL Western Blot Substrate kit were obtained from BioRad Laboratories (Hercules, CA, USA).
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2

Protein extraction and western blot

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Total soluble proteins were extracted from single larvae in RIPA buffer containing protease inhibitors (Sigma). Whole-larval lysates were obtained by sonication in 100 μl RIPA buffer using a Bioruptor Pico (Diagenode), 10 cycles of 10 sec on and 30 sec off. Proteins were quantified by bicinchoninic acid assay (BCA) assay; 30 μg of protein of each sample were separated by SDS-PAGE (10%). Antibodies raised in rabbit against ALDH7A1 and c-Fos were obtained from Sigma (code A9860) and Santa Cruz biosciences (code sc-166940 X) and used at dilutions 1:2500 and 1:100, respectively, in 3% BSA. Anti-rabbit IgG, HRP-linked antibody was used in a dilution of 1:2000. The Clarity ECL Western Blot Substrate kit (Bio-Rad, Hercules, CA) was used for chemiluminescent protein detection. Images were obtained and processed using the ChemiDoc Touch Imaging System (Bio-Rad).
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3

Butyrate and Cytokine Regulation of ICAM-1 and MAPK

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After stimulation with butyrate for 24 h and the inflammatory cytokines IL1β and TNFα for another three hours, HSC-2 cells were extracted with SDS buffer and inhibitors of protease (PhosSTOP with cOmplete; Sigma-Aldrich, St. Louis, MO, USA), divided by SDS-PAGE and transferred onto nitrocellulose membranes (Whatman, GE Healthcare, General Electric Company, Fairfield, CT, USA). Thereafter, membranes were submitted to blocking process for 2 h and exposed to the first antibodies (mouse ICAM-1 G-5 and actin C-2 both at 200 ng/mL; Santa Cruz Biotechnology, Santa Cruz, CA, USA) for 24 h. In another series, HSC-2 cells were exposed to butyrate for 24 h and to the cytokines for 30 min before exposed to antibodies against phosphorylated and complete p38 and c-Jun N terminal protein kinase MAPK (both Cell Signaling Technologies, Danvers, MA, USA). Then, proteins were detected by the appropriate HRP-conjugated secondary antibody at 40 ng/mL (Santa Cruz Biotechnology, Santa Cruz, CA, USA). Subsequently, chemiluminescence detection (Clarity ECL Western Blot Substrate kit, Bio-Rad Laboratories, Hercules, CA, USA) was performed with a ChemiDoc MP System (Bio-Rad Laboratories, Hercules, CA, USA).
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4

Western Blot Analysis of Immune Cells

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Isolated proteins from monocytes, neutrophils and PBMCs were separated on 12 % Mini-PROTEAN® TGX Precast Gel (BIO-RAD) and then transferred electrophoretically to PVDF membrane (BIO-RAD). The blot was then blocked with 5% Nonfat dry milk (NFDM) in Tris-buffered saline (TBS) with Tween 20 (0.5%, v/v) for 1 h at room temperature and subsequently incubated overnight at 4 degree with Anti MPO at dilution of 1:750 (DAKO) in TBS-Tween 20 (0.5%, v/v) [TBST] with 5% (w/v) NFDM. Following 3 washes of 5 min each with TBST, the blots were incubated with HRP-conjugated goat anti-rabbit IgG (R &D systems) (1:5000) in blocking buffer for 45 minutes at room temperature. After three washes with TBST, the blot was developed with Clarity ECL Western Blot Substrate kit (BIO-RAD) and exposed to Kodak Scientific Imaging X-OMAT LS Film from Carestream Health (Rochester, NY). Anti-actin antibody (Sigma) was used as loading control.
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5

Hippocampus Protein Levels Quantification

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Tau, GFAP, Iba1, and LRP1 protein levels in the SDS-soluble fraction of the hippocampus were semi-quantified by immunoblotting analysis. After blocking, membranes were incubated at 4 °C overnight with the corresponding primary antibody (HT7, 1:100, mouse monoclonal anti-human tau mAb; AT8, 1:50, mouse monoclonal anti-human phospho-tau (Ser202, Thr205); anti-GFAP, 1:2500; Iba1, 1:500; mouse monoclonal anti-LRP1 1:1000; abcam, ref. ab28320; and rabbit monoclonal anti-glyceraldehyde 3-phosphate dehydrogenase, GAPDH, 1:20000, abcam, ref. ab9483). Membranes were incubated at RT for 1 h with the corresponding secondary antibody (goat peroxidase conjugated anti-rabbit, 1:2000, Bio-Rad, ref. 1706515; and goat peroxidase conjugated anti-mouse, 1:2000, Sigma-Aldrich Química SL, ref. A3673. Finally, Western blotting (WB) results were visualized using a lumiol/peroxidase solution 1:1 (Clarity ECL Western Blot Substrate kit, Bio-Rad, ref. 170-5060). ImageJ was used for densitometric analyses, and bands were normalized to GAPDH loading controls for each sample.
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6

Immunoprecipitation and Western Blot Analysis

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293T cells transfected as described above were lysed in the whole cell lysate buffer supplemented with protease inhibitors as described above. Total protein concentration was determined using BCA protein assay (Bio-Rad). Lysates were stored at -80 ℃ until use. Protein A/G agarose beads (Sana Cruz Biotechnology) were blocked with 5% Bovine Serum Albumin (BSA). Blocked beads were incubated with anti-Flag antibody then combined with protein lysate and incubated for 2 h at 4 °C. Beads were washed with 1x TNN buffer (10 mM Tris-HCl 7.5, 0.1% NP-40 and 100 mM NaCl) and then heated for 5 min at 95 °C. Eluted proteins were loaded on 10% Bis-Tris gel and resolved in 1x MOPS running buffer supplemented with SDS and anti-oxidant (Invitrogen). Proteins in the gel were transferred to PVDF membrane. The membrane was blocked in 5% non-fat milk, washed in PBS buffer containing 0.1% Tween-20 (PBST) and incubated with primary antibodies including Anti-CDK9 (1:4000) (Rabbit, Lot No: I0414), Anti-Cyclin T1 (1:4000) (Rabbit, Lot No:D1709) or anti-Flag 1:2000 for 2 h at room temperature. The membrane was washed with PBST and incubated with HRP-conjugated anti-mouse or anti-rabbit and probed. Chemiluminescence was detected with chemiluminescent substrate (Clarity ECL Western Blot Substrate Kits, Bio-Rad) using ChemiDoc XRS Imaging station (Bio-Rad).
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7

Protein Extraction and Western Blot Analysis

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Proteins were extracted using an ice-cold RIPA lysis buffer (P00138, Beyotime, Nanjing, China) with proteinase inhibitor (ST506, Beyotime, Nanjing, China). Equal amounts of proteins were measured using an BCA protein assay kit (A045-3, Jiancheng, Nanjing, China). Proteins were separated by electrophoresis and then electronically transferred to polyvinylidene fluoride membranes (Merck Millipore, Billerica, USA) using a BioRad system (BioRad, Hercules, USA). The membrane was blocked in 5% skimmed milk at room temperature for 2 h and subsequently incubated overnight at 4°C with corresponding primary antibodies, rabbit anti-BCL2 (1:200), mouse anti-GRP78 (1:200), rabbit anti-LC3β (1:100, sc-28266, Santa Cruz Biotechnology, Santa Cruz, USA), rabbit anti-CYP11A1 (1:200, CSB-PA006389LA01HU, CusAb, Wuhan, China), mouse anti-BAX (1:100, ab5714) and mouse anti-β-actin (1:1000, ab8226, Abcam, Cambridge, UK). Horseradish peroxidase-conjugated goat anti-rabbit or anti-mouse IgG (sc-2004 or sc-2005, Santa Cruz Biotechnology, Dallas, USA) were then used to detect proteins using Clarity ECL Western Blot Substrate kits (BioRad, Hercules, USA) and exposed using a ChemiScope 3400 Mini machine (Clinx, Shanghai, China). Protein quantification was performed using densitometry analyses on Quantity One Software.
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