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5 protocols using pan acetyl h3

1

ChIP Assays and qPCR Analysis

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ChIP assays and analysis of fractions by qPCR were performed as previously validated and described in detail [77 (link)]. Primer sequences are shown in Table 2. Frozen tissue samples were finely ground in liquid nitrogen prior to the fixation and lysis procedure. Antibodies against the following epitopes were used: normal rabbit IgG control (Millipore, Burlington, MA, #12–370), panacetyl-H3 (Millipore #06599MI), trimethyl-H3Lys4 (Millipore #0473MI), RNA polymerase II CTD repeat (phospho-Ser5, Abcam, Cambridge, MA, #ab5131), RNA polymerase II CTD repeat (phospho-Ser2, Abcam #ab5095) and PRDM16 (Sigma Aldrich #SAB3500989). Bound:input ratios were determined by the comparative Ct value method as Bound/Input=2(input Ct-bound Ct) using a 1% v/v aliquot of input chromatin.
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2

Epigenetic and Apoptotic Pathway Analysis

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Following the drug treatments, cells were collected and resuspended in RIPA lysis buffer (Beyotime, China) and lysed by ultrasonic instrument. Then equal protein amount of the cell extracts was analyzed on a 12% SDS-polyacrylamide gels and transferred onto PVDF membranes. Membranes were blotted with primary antibodies targeting the following proteins: LSD1 (Sangon Biotech, Shanghai, China), pan-acetyl-H3 (Millipore, USA), Mono-Methyl-Histone H3 (Lys4), Di-Methyl-Histone H3 (Lys4), Tri-Methyl-Histone H3 (Lys4), Mono-Methyl-Histone H3 (Lys9), Di-Methyl-Histone H3 (Lys9), Tri-Methyl-Histone H3 (Lys9), PARP [poly(ADP-ribose) polymerase], Caspases-3, P21, P27, P57, Bcl-xL, Bcl-2, Bax and LC3B (all from Cell Signaling Technology, USA). β-actin (Abcam, USA) and Histone H3 (Abcam, USA) were used as internal controls. Then, membranes were incubated in HRP-conjugated secondary antibody and visualized using the HRP Substrate (Millipore, USA) by Image Quant LAS-4010 system (GE Healthcare, USA).
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3

Protein Extraction and Analysis

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Harvested cells were resuspended in a lysis buffer containing 50 mM Tris/HCl (pH 7.5), 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS and 0.1 mM PMSF. Proteins were analyzed by SDS-PAGE and Western blotting. Membranes were incubated with primary antibodies against pan-acetyl-H3 (Millipore, USA), PARP [poly(ADP-ribose) polymerase], γ-H2AX (Ser139), caspases-3, Bcl-xL, Bcl-2, Bax, H3, β-actin (all from Cell Signaling Technology, USA). Blots were visualized using the ECL (Millipore, USA) with Image Quant LAS-4010 (GE Healthcare, USA).
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4

Histone Modification Analysis by Immunoblotting

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Histones were isolated from cells and tissues as described previously52 (link). To study the histone modifications, 5 μg of isolated histones were analyzed by immunoblotting using acetyl-pan-H3 (cat no: 06-599), acetyl-pan-H4 (cat no: 04-557) (Millipore), acetyl-Histone H3 (Lys18) (cat no: 9675) and H3 (cat no: 4499) (Cell Signaling Technology).
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5

Histone Modification Analysis by Immunoblotting

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Histones were isolated from cells and tissues as described previously52 (link). To study the histone modifications, 5 μg of isolated histones were analyzed by immunoblotting using acetyl-pan-H3 (cat no: 06-599), acetyl-pan-H4 (cat no: 04-557) (Millipore), acetyl-Histone H3 (Lys18) (cat no: 9675) and H3 (cat no: 4499) (Cell Signaling Technology).
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