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5 protocols using ep1628y

1

Immunocytochemistry of Thymic Cells

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Cells were cultured as above, but poly-L-lysine coated 96-well glass bottom plates (MatTek, Ashland, MA, USA) were used with 200 μl medium per well and 1–2 pieces of thymic tissue per well. Cells were fixed using 100 μl 1:1 4% paraformaldehyde/PBS for 5 min. Unspecific binding was blocked with serum-free protein block for 15 min (Dako, Copenhagen, Denmark). Cells were stained with Abs against EpCAM (HEA125), K8 (EP1628Y, Abcam, Cambridge, UK), K5 (D5/16 B4, Dako), HLA-DR, (G46-6, BD Pharmingen, Franklin Lakes, NJ, USA) or CD11c (3.9, eBioscience, San Diego, CA, USA) for 30 min at 37 °C. The wells were gently washed twice with PBS followed by incubation with alexa fluor-conjugated anti-mouse or anti-rabbit secondary antibodies for 30 min in 37 °C and finally washed in PBS and refilled with PBS. The stained cells were analyzed using a Zeiss lsm 700 at × 10x or × 25 magnification (Zeiss, Oberkochen, Germany).
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2

Teratoma Formation Assay for hiPSCs

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Six to eight week-old immunodeficient SCID-beige mice were used for transplantation of WT hiPSC or B2M−/−CIITA−/− CD47 tg hiPSCs. Here 1 × 107cells were resuspended in 100 µl saline solution and injected into the right thigh muscle of the mice. Teratomas were recovered, fixed in 4% paraformaldehyde, dehydrated, embedded in paraffin and cut into sections of 5 µm thickness. For histopathology, sections were rehydrated and stained with hematoxylin and eosin. Images were taken with an inverted light microscope. For immunofluorescence, slides underwent heat-induced antigen retrieval in a steamer with Dako antigen-retrieval solution (Dako), followed by antigen blocking with Image-iT FX signal enhancer solution (Invitrogen). Tissue sections were incubated with a primary antibody against brachyury (Ab20680, Abcam), followed by a goat anti-rabbit IgG secondary antibody conjugated with Alexa Fluor 555 (Invitrogen). Subsequently, sections were incubated with primary antibodies against cytokeratin 8 (EP1628Y, Abcam) and GFAP (GA5, Cell Signaling) conjugated with AF488 or AF647, respectively. DAPI was used to counterstain cell nuclei and images were acquired with a Leica SP5 laser confocal microscope (Leica).
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3

Thymus Tissue Immunostaining Protocol

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Isolated thymi were fixed for one hour in PBS with 4% PFA, cryopreserved overnight in 30% sucrose, embedded in Tissue-Tek OCT (Sakura Finetek USA), and frozen sectioned at 10 μm. Tissue sections were stained with antibodies against phosphorylated STING (D8F4W, Cell Signaling Technology), cytokeratin 5 (EP1601Y, Abcam), and cytokeratin 8 (EP1628Y, Abcam). Fluorescent conjugated secondary antibodies were acquired from Thermo Fisher Scientific, and sections were counterstained with DAPI (BioLegend). Images were captured with a CREST LFOV Spinning Disk/C2 confocal.
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4

Histological Analysis of Mouse Tissues

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Mouse tissues were dissected and fixed in 4% paraformaldehyde for histology and IHC analysis. For staining, the tissues were embedded in paraffin according to standard procedures. 5 μm sections were cut and processed for histology or immunostaining. The following primary antibodies were used: 4-hydroxynonenal (Genox, MHN-020P, 1:500), COX-2 (Cell Signaling Technology, D5H5, 1:400), AR [Abcam, EPR1535(2), 1:250], CK8 (Abcam, EP1628Y, 1:250), SYP (Abcam, YE269, 1:400), and Ki67 (Thermo Fisher Scientific, SP6, 1:100). The stained slides were visualized by a bright-field microscope.
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5

Immunofluorescence Staining of Cytokeratins

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The Foxp3/transcription buffer kit (eBioscience 00-5523-00) was used after surface marker staining. Antibodies: cytokeratin 8 (abcam, EP1628Y, 1:1000), cytokeratin 13 (abcam, EPR3671, 1:2000), cytokeratin 14 (ThermoFisherScientific, LL002, 1:100), cytokeratin 15 AlexaFluor555 (abcam, EPR1614Y, 1:500).
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