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12 protocols using ab183830

1

Immunofluorescence Staining of Brain and Cell Samples

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Immunofluorescence staining was performed according to our previously published protocols [41 (link), 42 (link)]. Briefly, the brain sections (6 μm thick) were incubated with primary antibodies against ALX/FPR2 (1:200, cat. no. ab203129, Abcam), GFAP (1:200, cat. no. MAB3402X, EMD Millipore, USA), Iba-1 (1:200, RRID: AB_2224402), and NeuN (1:200, cat. no. ABN78A4, EMD Millipore, USA) overnight at 4 °C. Then, the brain sections were incubated with the corresponding secondary antibodies conjugated with Alexa Fluor 488 and/or Alexa Fluor 594 (Jackson ImmunoResearch Incorporation, West Grove, PA, USA) for 1 h at room temperature, after which a ZEISS HB050 inverted microscope system was used for fluorescence detection.
For in vitro cell staining, primary antibodies against Iba-1 (1:200, RRID: AB_2224402) and p65 (1:200, 1:1000, cat. no. D14E12, CST) were used for microglia staining, while a primary antibody against MAP2 (1:500, cat. no. ab183830, Abcam) was used to stain neurons. The protocols and the secondary antibodies used for in vitro cell staining were the same as those used to stain brain sections.
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2

Investigating Cellular Senescence Pathways

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MHY1485 (MCE, HY-B0795), Bafilomycin A1 (BafA1, MCE, HY-100558), anti-β-actin (Proteintech, 20536-1-AP), anti-p16 (SantaCruz, sc-1661), anti-p21 (SantaCruz, sc-6246), anti-γH2A.X (CST, 2577), anti-MAP2 (Abcam, ab183830), anti-MAP2 (Abcam, ab11268), mTOR (CST, 2983), p-mTOR (CST, 5536), LC3B (Affinity, AF4650), anti-p62 (CST, 23214), anti-ATG7 (Proteintech, 67341-1-lg), anti-REST (Novus, NBP1-82399).
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3

Immunostaining of Neuronal Markers

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Immunostaining was performed in primary cortical neurons and NE-4C cells. Cells seeded on coverslips were fixed with cold methanol (≥99.8%, yongda chemical reagent, Tianjin) for 10 min, and then incubated in 5% Bovine serum albumin (BSA, >99%, Solarbio) for 2 h to block nonspecific binding of IgG. Then the cells were reacted with primary antibody at 4°C overnight. The primary antibodies used in this experiment were rabbit monoclonal antibody against H3R (ab124732, Abcam, 1:200), mouse monoclonal antibody against Nestin (ab11306, Abcam, 1:200) and rabbit monoclonal antibody against MAP-2 (ab183830, Abcam, 1:100). After repeated washing in phosphate-buffered saline (PBS), cells were incubated with secondary antibody in 3% BSA for 2 h at 25°C. The secondary antibodies used in this experiment were donkey anti-rabbit IgG-Alexa Fluor 488 (A21206, Invitrogen, 1:500) and donkey anti-mouse IgG-Alexa Fluor 546 (A10036, Invitrogen, 1:500). After further washing in PBS, cultures were dried, and mounted on glass slides. The stained cells were observed under a laser scanning confocal microscope (Leica TCS SPE, Germany). Total dendritic length and neuronal complexity were quantified by using ImageJ software and the Fiji plugins Simple Neurite Tracer Analysis as well as Sholl Analysis.
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4

Immunofluorescence Staining of Hippocampal Neurons

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The hippocampal neurons were fixed with 4% PFA for 15 min, penetrated with 0.5% Triton X 100 at room temperature for 20 min, and blocked with 5% normal goat serum for 30 min. For tissue staining, the paraffin‐embedded cortex tissue sections were dewaxed, rehydrated, boiled in 3% citrate sodium at 100℃ for 20 min, and blocked in the QuickBlock™ Blocking Buffer (cat. No. P0260; Beyotime Biotechnology Co., Ltd., Shanghai, China) at room temperature for 1 h. The sections were incubated with anti‐NeuN (1:500; ab104224; Abcam), anti‐MAP2 (ab183830, Abcam), and anti‐β‐catenin (#13‐8400, Thermo Fisher Scientific) at 4℃ overnight and then with FITC‐conjugated goat anti‐rabbit IgG (1:500; cat. No. A0562; Beyotime) or goat anti‐mouse IgG (1:500, cat. No. A0568, Beyotime) at room temperature for 1 h. The nuclei were stained with DAPI (Beyotime) at room temperature for 5 min. The staining was observed under a fluorescence microscope, and the mean signal intensity was examined using the Image‐pro plus 6.0 software (Media Cybernetics Inc., Bethesda MD, USA).
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5

Neuronal Cell Immunofluorescence Staining

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The cells were fixed with methanol (Supelco-107018) for 10 min, then washed three times with PBS and permeabilized (PBS-Triton X-100 0.2%; Sigma-Aldrich) for 15 min. Cells were blocked with 2% PBS with bovine serum albumin (BSA; Sigma-Aldrich) solution for 1 h, following incubation in 2% PBS-BSA containing the primary antibodies: anti-β-III-tubulin rabbit (1:500 dilution; Abcam, Cambridge, Reino Unid, ab18207), anti-MAP2 rabbit (1:500 dilution; Abcam ab183830) and, anti-NeuN rabbit (1:500 dilution; Abcam ab104225) for 60 min at room temperature. Next, cells were washed three times with 0.1% PBS-Tween20 (Sigma-Aldrich) and incubated with Alexa Fluor® 488 anti-rabbit secondary antibody or Alexa Fluor® 651 anti-rabbit (Invitrogen, Life Technologies, Carlsbad, CA, USA) diluted 1:200 (1% PBS-BSA) for 30 min and washed again with 0.1% Tween20-PBS. Cells were stained with Hoechst 33342 (0.15µg/mL; Sigma-Aldrich) and analyzed under a fluorescence microscope (ZEISS Axio Imager, Jena, Germany).
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6

Immunocytochemistry of Neural Cells

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The 2D and 3D samples were fixed in 4% paraformaldehyde for 30 mins at 4 °C and washed twice with PBS for 10 mins. Cells were then permeabilized with 0.5% Triton X-100 (Sigma-Aldrich) diluted in PBS for 30 mins at room temperature and washed three times with PBS. Cells were blocked with 3% bovine serum albumin (BSA) (HiMEDIA, PA, USA) for 30 mins at room temperature. After the blocking step, appropriate primary antibody dilutions of rabbit α-MAP2 (Abcam; ab183830), rabbit α-β-III tubulin (Abcam; ab18207), rat α-CTIP2 (Abcam; ab 18465), mouse α-PSD95 (Novus Biologicals; nb300-556) and horse α-rabies antiserum were added and incubated overnight at 4°C. The following day, gels were washed six times with PBS (5 mins per each round) and incubated with secondary antibodies, namely Alexa Fluor® 568-conjugated goat α-rabbit (Invitrogen) and Dylight 488-conjugated goat α-horse IgG (Abcam; ab102391), at 1:250 dilutions. Alexa Fluor 488 Phalloidin (Thermo Fisher Scientific) was also used. Cells were stained with Hoechst-33342 and visualized under an IX83 fluorescence microscope (Olympus).
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7

Immunocytochemical Analysis of Primary Hippocampal Cells

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Primary cultured hippocampal cells were fixed with 4% paraformaldehyde. After treatment with 0.3% Triton X-100 for 10 min, the cells were blocked with normal goat serum (1:10, SL038, Solarbio) for an hour at room temperature. An anti-NeuN antibody (1:5000, ab104224, Abcam) and an anti-MAP2 antibody (1:1000, ab183830, Abcam) were mixed and used as primary antibodies for cell incubation. Alexa Fluor 488-conjugated AffiniPure goat anti-mouse IgG (H + L) (115-545-003, Jackson) and Alexa Fluor 594-conjugated AffiniPure donkey anti-rabbit IgG (H + L) (711-585-152, Jackson) were mixed as secondary antibodies. The nuclei were labelled with Hoechst 33,258 staining solution (C0021, Solarbio).
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8

Immunofluorescence Staining of Neural Markers

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Cultured cells or spinal cord tissues were fixed with 4% paraformaldehyde, and then placed in blocking buffer (20% normal goat plasma, 10% FBS and 0.25% Triton X-100 in PBS) for 1 h. Following blocking, the sections were exposed to primary antibodies and incubated overnight at 4 °C. The primary antibodies used were rabbit anti-Tuj1 (1:1000; ab18207, Abcam, Waltham, MA, USA), rabbit anti-Map2 (1:1000; ab183830, Abcam, Waltham, MA, USA), mouse anti-GAD1 (1:200; 67648-1-Ig, Proteintech, Wuhan, China), rabbit anti-Synapsin 1 (1:1000; ab32127, Abcam, Waltham, MA, USA), and mouse anti-NeuN (1:1000; ab104224, Abcam, Waltham, MA, USA). On the subsequent day, the sections underwent three washes with PBS for 5 min each, followed by incubation with the corresponding secondary antibody conjugated to Alexa Fluor 488, 555, or 647 (1:1000; A32723 A32727, Invitrogen, Waltham, MA, USA; ab150077 ab150078 ab150115, Abcam, Waltham, MA, USA) for 1.5 h at room temperature. The fluorescence intensity was analyzed using a laser microscope (Zeiss LSM 980, Jena, Germany).
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9

Immunohistochemistry of Neural Markers

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The following antibodies were used at the indicated dilutions: rabbit anti-NGLY1 (1:200; HPA036825; Atlas Antibodies, Bromma, Sweden), guinea pig anti-p62 (1:1000; GP62-C; Progen, Heidelberg, Germany), mouse anti-glyceraldehyde 3-phosphate dehydrogenase (6C5; 1:5000; MAB374; Millipore, Burlington, MA, U.S.A.), rabbit anti-choline acetyltransferase (ChAT; 1:2000; ab178850; Abcam, Cambridge, United Kingdom), rabbit anti-glial fibrillary acidic protein (GFAP; 1:2000; ab7260; Abcam), goat anti-ionized calcium-binding adaptor molecule 1 (IbaI; 1:1000; ab5076; Abcam), rabbit anti-MAP2 (1:4000; ab183830; Abcam), rabbit anti-cleaved caspase-3 (1:200; #9661; CST, Danvers, MA, U.S.A.), rabbit anti-NeuN (1:3000; ab177487; Abcam), mouse anti-NeuN (1:1000; SIG-39860; BioLegend, San Diego, CA, U.S.A.), and mouse anti-ubiquitin (1B3; 1:200; MK-11-3; MBL, Nagoya, Japan) antibodies.
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10

Immunofluorescence Staining of Neurons

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Immunofluorescence was performed as previously described (Xie et al., 2018 (link)). Briefly, cells were fixed with 4% paraformaldehyde at 4°C for 20 min, permeabilized with 0.5% Triton X‐100 in PBS, and incubated at 4°C with antibodies against NeuN (cat. no. ab104224, Abcam, diluted with 5%BSA to 1:250) and MAP2 (cat. no. ab183830, Abcam, diluted with 5% BSA to 1:250) overnight. Cells were then incubated with Goat anti‐Rabbit IgG (H+L) Secondary Antibody (FITC; cat. no. 31635, diluted with 5%BSA to 1:250) and Goat anti‐Rabbit IgG (H+L) Cross‐Adsorbed Secondary Antibody (Alexa Fluor™ 546; cat. no. A‐11010, diluted with 5% BSA to 1:250, Thermo Fisher Scientific, Inc.) at 37°C for 1 h. Nuclei were stained with DAPI for 5 min and viewed using an LSM780 laser scanning confocal microscope (scale bar = 50 μm)(Carl Zeiss GmbH).
To detect early apoptotic cells, treated neurons were stained with Annexin V‐FITC (Beyotime Institute of Biotechnology) in PBS for 15 min at 37°C, washed with PBS, and incubated with Hoechst 33342 (Beyotime Institute of Biotechnology) to stain the nuclei for 5 min (room temperature ), washed with PBS, and viewed using an LSM780 laser scanning confocal microscope (scale bar = 50 μm).
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