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9 protocols using nitrocellulose filter nc membrane

1

Western Blot Analysis of EMP1 Protein

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Cells in six-well plates were lysed with NP-40 buffer (Beyotime, Shanghai, China) with 0.1% mM phenylmethylsulfonyl fluoride (PMSF) protease inhibitor cocktail (Roche Molecular Biochemicals) for 30 min in ice. SDS was introduced to the supernatant and boiled for 10 min after centrifugation at 12,000 ×g for 10 min at 4°C. Before Western blotting, protein concentrations were determined by BCA assay. Cell lysates were separated by SDS-PAGE and transferred to nitrocellulose filter (NC) membranes (Millipore, Billerica, MA), then blocked with 5% nonfat dry milk in TBST (20 mM Tris, pH 7.4, 150 mM NaCl, 0.1% Tween 20) for 2 h at room temperature, and then incubated with anti-EMP1 (ab230445, Abcam, Cambridge, MA) antibody or anti-GAPDH (LF205, Epizyme, Shanghai, China) antibody at 4°C overnight. After three rounds of washing with TBST, the membrane was incubated with a secondary antibody in PBS for 1 h at room temperature in the dark. After using TBST for washing three times, the membrane was scanned and analyzed in an Odyssey infrared imaging system (Li-Cor Biosciences, Lincoln, Nebraska USA).
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2

Western Blot Analysis of hUCMSC Markers

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hUCMSCs were collected and lysed in 1x RIPA buffer (Solarbio, China) containing protease inhibitors (Sangon Biotech, China) on ice for 30 minutes. Protein lysate was separated through 10% SDS-PAGE and then transferred to nitrocellulose filter (NC) membranes (Millipore, USA). The membranes were blocked with a blocking solution (5% skim milk in TBST) for 1 h at room temperature and then incubated with primary antibodies, including rabbit anti-human P21, p-P53-ser15, P53, SIRT3, OCT4, SOX2, and GAPDH (1 : 2000, Abcam, Cambridge, UK) and rabbit anti-human ALP, RUNX2, PPARγ, and FABP4 (1 : 1000, Biorbyt, San Francisco, CA, USA) overnight at 4°C. Furthermore, the NC membranes were washed and incubated with goat anti-rabbit antibody (1 : 10000, Abcam) for 1 h at room temperature in the dark. The special bands were visualized using a two-color infrared laser imaging system (LI-COR, Odyssey, USA). Protein expression levels detected by western blotting were quantified using ImageJ software (version 1.52U, NIH, USA).
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3

TGEV Infection and Protein Analysis

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ST cells were infected with TGEV or transfected with plasmids in 6-well plates; each well of a 6-well plate was lysed with 100 μL of NP-40 buffer (Beyotime, China, Shanghai) containing 0.1% mM phenylmethylsulfonyl fluoride (PMSF) protease inhibitor cocktail (Roche Molecular Biochemicals) for 30 min in ice. After centrifugation for 12,000 × g for 10 min at 4°C, SDS was added to the supernatant and boiled for 10 min. Cell lysates were electrophoresed on SDS-PAGE gels, transferred to nitrocellulose filter (NC) membranes (Millipore, Billerica, MA, USA), then blocked with 5% nonfat dry milk in TBST (20 mM Tris [pH 7.4], 150 mM NaCl, 0.1% Tween 20) for 2 h at room temperature, and incubated with the primary antibodies at 4°C overnight. After three washings with TBST, the membrane was incubated with the corresponding IRDye800-conjugated anti-mouse IgG (Invitrogen, Carlsbad, CA) in PBS for 1 h at room temperature. After three washings with TBST, the membrane was scanned and analyzed in an Odyssey infrared imaging system (Li-Cor Biosciences).
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4

Western Blot Analysis of GLS Protein

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The GLS expressions were detected by Western blot analysis. After treatments, cells were harvested and lysed by RIPA buffer containing protease inhibitor cocktail (Sigma, St. Louis, MO, U.S.A.). Lysates were incubated at 4°C for 30 min followed by centrifugation at 12000 rpm for 10 min at 4°C. The protein concentrations were measured by Bradford assay (Beyotime, China). Protein samples (30 μg) were separated by 10% SDS/PAGE. Proteins were transferred on to 0.22 μm-pore-diameter nitrocellulose filter (NC) membranes (Millipore, U.S.A.). Membranes were blocked with 5% BSA for 1 h at room temperature, followed by incubation with primary rabbit antibodies against GLS (ab93434, Abcam, U.S.A.) (1:1000) and β-actin (Boster Bio, China) (1:2000) for overnight at 4°C. After washing with TBS/T three times, the membranes were incubated with secondary antibody (1:3000) for 1 h at room temperature. Then, the membranes were washed and scanned by using an Odyssey Infrared Imaging System (LI-COR, U.S.A.).
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5

Protein Expression Analysis via Western Blot and ELISA

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After treatments, cells were harvested and lysed using RIPA lysis buffer (Beyotime, Biotechnology, China) containing protease inhibitor cocktail (Roche). Protein concentrations were detected using the BCA method, and equal amounts of protein for each lysate sample were subject to SDS-PAGE at 80–130 V for 90–120 min, and then transferred to nitrocellulose filter (NC) membrane (Millipore, Boston, MA, USA). After blockade in tris-buffered saline and Tween-20 (TBS-T; 10 mM Tris, 150 mM NaCl, and 0.1% Tween-20) containing 5% nonfat dry milk or 3% bovine serum albumin (BSA), the membranes were incubated with indicated primary antibodies diluted in BSA buffer, overnight at 4 °C. The membranes were washed three times in TBS-T followed by 1 h incubation with secondary antibodies conjugated with horseradish peroxidase (HRP) at room temperature. Then the membranes were washed before enhanced chemiluminescence exposure. GAPDH or β-actin were used as housekeeping controls. Chemiluminescent detection was carried out on the ChemiDoc™ XRS + System with Image Lab™ Software (Bio-Rad, Hercules, USA). Antibody information was showed in Table S1.
For cytokine concentration measurements, ELISA was performed according to manufacturer’s instructions using cell supernatants following incubation and centrifugation. The ELISA kits are listed in Table S1.
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6

Western Blot Analysis of Glioma Proteins

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RIPA lysis buffer supplemented with protease and phosphatase inhibitors (Beyotime, Shanghai, China) was used to separate total protein from human glioma cells and tissues. The concentration of total protein was determined with a BCA kit (Solarbio, Beijing, China). An equal amount of total protein (30 µg) was electrophoresed on 10%−12% SDS-PAGE, and then electro-transferred to a nitrocellulose filter (NC) membrane (Millipore, MA, USA). Then, the membranes were blocked with 5% non-fat dry milk in TBST at RT for 1 h. After washing with TBST, the membranes were incubated with subsequent primary antibodies at 4 °C overnight. On the second day, the membranes were incubated with HRP-labeled secondary antibodies (Proteintech, Wuhan, China) at RT for 1 h. An enhanced chemiluminescence system (Millipore, MA, USA) was used to measure protein expression value. The relative quantity of proteins was analyzed by Image J software. The antibodies are shown in Table S2.
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7

Protein Extraction and Western Blot Analysis

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Cells were collected and lysed in protein lysis buffer (50 mM Tris-Cl, pH 7.6, 150 mM NaCl, 1 mM Ethylene Diamine Tetraacetic Acid (EDTA), 1% (m/v) Nonidet P-40 (NP-40), 0.2 mM phenylmethanesulfonyl fluoride (PMSF), 0.1 mM NaF and 1.0 mM dithiothreitol). The lysates were clarified by centrifugation at 4 °C for 20 min at 14,000 rpm. The concentration of protein in the supernatants was measured using a BCA assay kit. An equal amount of protein lysate (50 μg) was placed on a sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) system for 2 h at 100 V, followed by transfer of the protein to an Nitrocellulose filter (NC) membrane (Millipore, Boston, MA, USA). The blots were blocked with 3% BSA in PBS at 37 °C for 1 h and were incubated with specific antibodies against indicated primary antibodies overnight at 4 °C. The membranes were washed three times with PBS containing 1% Tween-20, and probed with IRDyeTM 800-conjugated secondary antibody for 1 h at 37 °C. Blots were reacted with enhanced chemiluminescence (ECL) reagent (Bio-Rad, Hercules, CA, USA) and signals were detected by Amersham Imager 600 (GE, Piscataway, NJ, USA).
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8

Tissue Homogenization and Western Blot Analysis

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After removing the brain rapidly, the tissues were separated from the brain and then homogenized on ice with a microcontent motor-operated tissue homogenizer (Kimble knots, USA) in ice-cold lysis buffer (1×PBS, 1% Nonidet P-40, 0.5% sodium deoxycholate, and 0.1% SDS, RIPA) supplemented with protease inhibitors. Lysates were centrifuged at 10,000 × g for 20 min at 4°C, the supernatants were collected. Protein concentrations were determined by a Bradford protein assay. Equal amounts of protein (30µg) were separated by SDS-PAGE and electroblotted onto nitrocellulose filter (NC) membrane (Millipore). After non-specific antibody binding was blocked with 5% non-fat dry milk, membranes were incubated at 4°C overnight with polyclonal rabbit anti-TH (1:2000, Millipore, USA), polyclonal rabbit anti-α-synuclein (1:1000, Cayman Chemicals Company, USA), monoclonal rabbit anti-GAPDH (1:8000, Epitomics, USA). After washing in TBST, the immunoblots were incubated with horseradish peroxidaseconjugated secondary antibodies (Cell Signaling Technology) for 1h. The immunoblots were developed with an enhanced chemiluminescence (ECL) reagents (Millipore, USA), and measured with Quantity Software (Bio-Rad, CA). To compare protein loading, antibody directed against GAPDH was used.
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9

Western Blot Analysis of Brain Proteins

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After rapid brain removal, the tissue was separated from the brain and homogenized on ice with a micro-content electric tissue homogenizer (KIMBLEKONTES, USA) in frozen lysis buffer (1×PBS, 1% Nonidet P-40, 0.5% sodium deoxycholate, and 0.1% SDS, RIPA) containing protease inhibitors. Lysates underwent the centrifugation at 4°C for 20 min at 10,000 × g, and the authors collected the supernatants. With the use of a Bradford protein assay, the concentrations of protein were ascertained. Protein with equal amounts (30 µg) underwent the separation using the SDS-PAGE and electroblotted on nitrocellulose filter (NC) membrane (Millipore). After non-specific antibody binding was blocked with 5% non-fat dry milk, membranes underwent the incubation at 4°C overnight with monoclonal rabbit anti-TH (1:2000; Millipore), anti-iNOS (1:1000; Proteintech), anti-Arg-1(1:1000; BD). After being washed in TBST, the immunoblots underwent the incubation with horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology) for 1 h. Using enhanced chemiluminescence (ECL) reagents (Millipore, USA), the immunoblots were developed, and they underwent the measurement using Quantity Software (Bio-Rad, CA). For the comparison of protein loading, antibody directed against GAPDH was employed.
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