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2 protocols using n4 acetylcytidine

1

Capillary-Based Silica Functionalization for Nucleoside Analysis

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Fused-silica capillary (250 μm i.d. × 360 μm o.d.) was purchased from Yongnian Optic Fiber Plant (Hebei, China). Tetramethoxysilane (TMOS) and 3-mercaptopropyltrimethoxysilane (MPTMS) were purchased from Wuhan University Silicone New Material (Wuhan, China). Azobisisobutyronitrile (AIBN) and poly(ethylene glycol) with the molecular weight of 6000 (PEG-6000) were all purchased from Shanghai Chemical Reagent Corporation (Shanghai, China). AIBN was purified by recrystallization from ethanol at 40°C. 3-acrylamidophenylboronic acid (AAPBA) and creatinine were purchased from Sigma-Aldrich (Beijing, China). Organic solvents were all of HPLC grade. The water used throughout all experiments was purified using a Milli-Q apparatus (Millipore, Bradford, USA). All other reagents were obtained from various commercial sources and were of analytical grade unless otherwise indicated.
2′-Deoxycytidine (dC), 2′-deoxyguanosine (dG), 2′-deoxyadenosine (dA), thymidine (T), cytidine (rC), guanosine (rG), adenosine (rA), uridine (rU), 1-methyladenosine, N6-methyladenosine, 5′-deoxyadenosine, inosine, xanthosine, 3-methylcytidine, N4-acetylcytidine, 5-methyluridine, 3-methyluridine, pseudouridine, double hydrogen zeatin-riboside (DHzR) were purchased from Sigma-Aldrich (Beijing, China). The standard solution of each analyte was prepared at 1.0 mg/mL in H2O and stored at −20°C.
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2

Comprehensive Nucleoside Analysis Using HPLC-MS

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We used methanol (LC/MS grade, Carl Roth GmbH & CO, Karlsruhe, Germany), ultrapure water prepared from Purelab Ultra laboratory water purification system (Elga LabWater, Celle, Germany) and analytical grade formic acid (Sigma-Aldrich, Munich, Germany) for HPLC analysis. Ammoniumacetat (VWR international, Darmstadt, Germany), sodium chloride (Carl Roth GmbH & CO, Karlsruhe, Germany) and boronate-derivatized polyacrilamide gel (Biorad, Richmond, USA) were used for affinity chromatography. S-Adenosylmethionine (SAM), S-Adenosylhomocysteine (SAH), Cytidine (C), Adenosine (A), N4-AcetylCytidine (ac4C), Uridine (U), Guanosine (G), 5,6-DihydroUridine (D), 5-HydroxyUridine (5-OHU), 5-Aminoimidazol-4-carboxamid 1-β-D-Ribofuranosid (AICAR), Inosine (I), 5-MethylUridine (m5U), 1-MethylAdenosine (m1A), N6-MethylAdenosine (m6A), 1-MethylGuanosine (m1G), N2-MethylGuanosine (m2G), 5-Desoxy-5-MethylthioAdenosine (MTA), Xanthosine Dihydrate (X) and Nucleoside Test Mix were purchased from Sigma-Aldrich (Munich, Germany). PseudoUridine (Ψ) and IsoGuanosine (Isog) were purchased from Carbosynth (Berkshire, UK). N2,N2,7-TrimethylGuanosine (TMG) was purchased from Biolog (Bremen, Germany).
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