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34 protocols using ascentis express c18

1

RP-HPLC Analysis of Azacitidine

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HPLC analysis was performed on a Thermo Scientific Dionex Ultimate 3000 HPLC system (Thermo Scientific, Bremen, Germany) equipped with an LPG-3400SD pump, TCC-3000 column oven, and UV VWD-3100 detector.
According to the United States Pharmacopeia’s (USP) pending monograph for azacitidine [34 ] and certificate of analysis (CoA) of azacitidine reference material supplied by Merck Life Science S.r.l. (Milan, Italy), the HPLC analysis using a reversed-phase high-performance liquid chromatography (RP-HPLC; Ascentis Express C18, 150 mm × 4.6 mm, 2.7 μm; Merck Life Science S.r.l. (Milan, Italy) with a linear A-B gradient (0–4.8 min 0% B, 4.8–12 min 0% to 15% B, 12–15 min 15% B, 15–18 min 15% to 30% B, 18–24 min 30% to 50% B, 24–27 min 50% to 0% B, 27–33 min 0% B) at a flow rate of 0.8 mL/min and a total run time of 33 min was performed. Solvent A consisted of 1.54 g/mL ammonium acetate in water (0.02 M, pH 6.9 ± 0.1) and solvent B consisted of solvent A:methanol:acetonitrile (50:30:20).
UV absorbance was measured at 210 nm. The column temperature was kept at 30 °C. The injection volume was 20 μL.
The Chromeleon data system software (Version 7.2.8) was used for data acquisition and mathematical calculations.
The extensive validation of the analytical method was carried out according to ICH Q2(R1) guidelines [27 ] (see Supplementary Materials).
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2

Degradation of Diclofenac in Mineral Salts Medium

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Degradation experiments were performed at 30 °C in mineral salts medium (MSM) with the following composition: g L−1: 3.78 Na2HPO4 × 12 H2O; 0.5 KH2PO4; 5.0 NH4Cl; 0.2 MgSO4 × 7 H2O and 0.01 yeast extract under (1) mono-substrate conditions with 1 mg L−1 of DCF and initial OD600 set at 0.750, (2) co-metabolic conditions with glucose at a concentration of 0.1% (v/v), 1 mg L−1 of DCF and initial OD600 set at 0.05, (3) co-metabolic conditions with glucose (0.1%, v/v) and sodium acetate at the concentration of 5.6 mM, 1 mg L−1 of DCF and initial OD600 set at 0.05. The degradation rate was determined with the High-Performance Liquid Chromatography (HPLC) technique using Merck Hitachi reversed-phase chromatograph (Mannheim, Germany), equipped with a column Ascentis Express® C18, pre-column Opti-Solv® EXP and UV/Vis DAD detector. The mobile phase consisted of acetonitrile, methanol and 1% acetic acid (50:30:20, v/v, flow-rate 1 mL min−1). The detection wavelength was set at 276 nm. DCF in the supernatant was identified by comparing the HPLC retention time and UV spectra with that of the external standard [23 (link)].
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3

HPLC-MS Analysis of Organic Compounds

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Analyses were carried out on a Ascentis Express C18, 15 cm × 4.6 mm internal diameter (i.d.), with particle size of 2.7 µm (Merck Life Science, Merck KGaA, Darmstadt, Germany). The injection volume was 5 µL, and the mobile phase consisted of water/formic acid (99.9:0.1, v/v) (solvent A) and ACN/formic acid (99.9:0.1, v/v) (solvent B); the linear gradient profile was as follows: 0 min, 0% B; 15 min, 5% B; 65 min, 20% B; 95 min, 35% B; 100 min, 100% B; 101 min, 0% B. The flow rate for separation and detection was 1 mL/min, and it was split to 0.2 mL/min prior to MS detection.
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4

HPLC Analysis of Bile Acids

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Bile acids were analysed using an Agilent HPLC series 1200 system (Agilent, Santa Clara, CA, USA) equipped with Open Lab CDS software version 2.3, a G1379 degasser, a G1312B binary gradient pump, a G1367D thermo autosampler, a G1316B column oven, and a G1315C diode array detector. The column used was an Ascentis® Express C18 (150 × 4.6 mm i.d.; 2.7 μm particle size) from Supelco® Analytical (Merck KGaA, Darmstadt, Germany) operated at 40 °C. The binary gradient consisted of a water solution containing 0.012% formic acid and 5 mM ammonium acetate (solvent A) and methanol containing 0.012% formic acid and 5 mM ammonium acetate (solvent B) [23 (link),24 (link)]. A binary gradient program was applied as follows: Linearly gradient 70% to 100% B in 10 min; held at 100% B for 5 min followed by re-equilibration at 70% B for 5 min. The injection volume was 10 μL and column flow was 0.6 mL/min. Bile acids were detected at 200 nm and quantitated using peak area analysis.
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5

Endophyte Metabolite Profiling Using HPLC-MS

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Extracts of endophytic cultures were screened using a Dionex Ultimate 3000 HPLC-UV system coupled to a Bruker maXis 4 G ultra-high-resolution-qTOF mass spectrometer operated in positive electrospray ionization (ESI) with calibrations done using sodium formate ion clusters. LC-MS data were collected using a scan range of 150–1100 m/z, with the nebulizer gas (nitrogen) at 3 bar, dry gas flow at 8 L/min, dry gas temperature at 240 °C, and capillary voltage at 4500 V. Chromatographic separations were performed using a standardized HPLC-UV method with a Supelco Ascentis Express C18 reverse-phase core-shell column (150 × 4.6 mm, 2.7 μm, Sigma Aldrich, USA) operating at 750 μL/min and at 40 °C. UV/vis data were acquired from 190–600 nm and monitored at four wavelengths (210, 254, 275 and 350 nm). Mobile phase composition was linear with a gradient of 5% organic from 0 to 1 min, 5–95% from 1 to 24 min, 95–100% from 24 to 25 min, and 100% from 25 to 31 min. Solvent A was H2O + 0.1% formic acid and solvent B was acetonitrile with 0.1% formic acid (v/v). HR-MS/MS analysis was performed on a Thermo Q-Exactive Orbitrap mass spectrometer operated in positive electrospray ionization (ESI+) and coupled to an Agilent 1290 HPLC system.
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6

Laccase-Catalyzed SMX Degradation

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The SMX degradation was carried out by HNTs-M-chitosan (1%)-GTA-Laccase. The reaction mixture was as follows: 25 ppm SMX, 1 mM redox mediator (either ABTS, SA or GUA), HNTs-M-chitosan (1%)-GTA-Laccase in sodium acetate buffer, pH 4.0. The reaction was carried out with each redox mediator separately for 4 h at 200 rpm and 20 °C. The degradation of the SMX was measured with high-performance liquid chromatography (HPLC, Shimadzu LC-20AD, Kyoto, Japan) at a detection wavelength of 286 nm with a mobile phase of methanol:water (60:40) at a flow rate of 0.6 mL/min with the C18 column (Ascentis® Express C18, Sigma-Aldrich, St. Louis, MO, USA, 2.7 μm HPLC Column 2.7 μm particle size, length × inner diameter- 5 cm × 4.6 mm). The SMX degradation was measured as Equation (4):
SMX degradation (%)=PstdPdeg/Pstd×100
where Pstd is peak area of the standard SMX peak before the degradation experiment, and Pdeg is peak area of the SMX peak after the degradation experiment. The SMX degradation was also carried out in repeated cycles. After completion of the first cycle, the HNTs-M-chitosan (1%)-GTA-Laccase was washed thoroughly with sodium acetate reaction buffer three times. The washed HNTs-M-chitosan (1%)-GTA-Laccase was added to fresh reactants for the SMX degradation experiment for 6 cycles.
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7

HPLC-MS/MS Analysis of Quorum Sensing Signals

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The HPLC-MS/MS analysis was performed as described in Purohit et al. (2013) (link) and Hansen et al. (2015) (link). Briefly HPLC-MS/MS was performed using an Ascentis Express C18 reversed-phase column (50 × 2.1 mm, 2.7 µm particle size; Sigma). A sample of 20 µl was injected into the column and eluted using 0.1% formic acid in water and 0.1% formic acid in acetonitrile at a flow rate of 200 µl/min. The elution profile obtained was 5% acetonitrile in 30 s, 90% in 300 s and 5% in the next 60 s. The separated compounds were detected by Linear Ion Trap Quadrapole (LTQ) part of the LTQ-Orbitrap (Thermo Fisher Scientific). The LTQ was used in selected reaction monitoring (SRM) mode, and the SRM was divided into two segments. Segment 1 scanned 3OHC10-HSL and segment 2 scanned the internal standard 3O-C12-HSL with a retention time of 0–3.15 min and 3.15–6.00 min, respectively. The ion trap parameters chosen for MS/MS were maximum injection time 50 ms, isowidth 1.0 m/z, collision energy 35, act Q 0.25 and act time 30 ms. The measured AHLs are presented in ng/ml/OD600. The AHL measurements at different temperatures were performed twice.
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8

HPLC-MS Analysis of Saponins

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HPLC–MS was performed with an Agilent 1200 system (Agilent) coupled to a Finnigan LTQ Orbitrap XL (Thermo Fisher Scientific, Waltham, MA), which was equipped with an electrospray source operating in the negative-ionization mode. An
aliquot of the extracted sample (5 μL) was injected into an Ascentis Express C18 (2.7 µm, 150 × 4.6 mm; Sigma, St. Louis, MO) with mobile phases that consisted of 0.1% (v/v) aqueous formic acid (solvent A) and 0.1% (v/v) formic acid in acetonitrile (solvent B). The gradient program was as follows: 30–60% solvent B for the first 48 min, 60–95% solvent B for the next 2 min, 95% solvent B for the next 5 min, and 30% solvent B for the last 5 min, with a flow rate of 0.5 mL/min. The column oven temperature was set at 40 °C. HPLC–MS analysis was performed using electrospray ionization (ESI) in negative-ionization mode. The full scan (m/z 800–2000) used a resolution of 60,000. MS/MS were acquired on a Top5 data-dependent mode with a parent list for saponins.
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9

Analytical Instrumentation for Complex Samples

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The 2, 15, and 50 mL polypropylene centrifuge tubes by LabServ Fisher-Scientific (Kuala Lumpur, Malaysia), and 100 and 500 µL microsyringes were obtained from Agilent (Australia). The HPLC autosampler vials were purchased from Agilent Technologies (USA) and other equipments such as Dynamica refrigerated centrifuge by CNG instruments (Selangor, Malaysia), vortexer VTX-3000L by Copens Scientific (Tokyo, Japan) and glass jug blender MX-GX1581WSK (Panasonic, Malaysia) and Supelco HPLC column [Ascentis ® Express C18 (5 cm x 2.1 mm, 2.7 µm)] (Sigma-Aldrich, USA). The others include weighing balance (Sartorius Technology Park, Germany), pH meter PB (Sartorius group, Germany) and Agilent triple quadrupole LC/MS G6490A [built in Electrosprays ESI (±) MS/MS Sensitivity and Jet stream Technology] instrument (Singapore).
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10

Quantification of Pesticides by LC-MS/MS

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The chemicals and reagents such as the stock standard solution (100 mg/kg) for pesticide Baycarb, Carbaryl, Diazinon, Dursban, Metalaxyl, Propamocarb, Thiamethoxam and Thiobencarbwere were purchased from AccuStandard ® (New Haven, USA). The LC-MS grade organic solvents that include ACN and methanol were purchased from Merck (Germany). The formic acid was purchased from Fisher Scientific. The Millipore-filtered (deionized) water was obtained using Merck Millipore water purification system (Billerica, USA). While, the apparatus and equipments that include the 100 and 500 µL microsyringe were purchased from Agilent (Australia). The pH meter PB was purchased from Sartorius group (Germany). The HPLC autosampler vials were purchased from Agilent Technologies (USA). The Supelco HPLC column [Ascentis ® Express C18 (5 cm x 2.1 mm, 2.7 µm)] was purchased from Sigma-Aldrich (USA). And the liquid chromatography-tandem mass spectrometry (LC-MS/MS) [triple quadrupole (G6490A) built in Electrospray ESI (±) MS/MS Sensitivity and Jet stream Technology] instrument was purchased from Agilent (Singapore).
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