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119 protocols using amersham ecl

1

BRCA1 Detection by Western Blot

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BRCA1 detection using western blotting was performed as following. Briefly, the primary antibodies against BRCA1 (1:50 dilution) and against GAPDH (1:20 000 dilution) were used. GAPDH was used as a loading control. Washes were carried out with Tris-buffered Saline Tween 20 (TBST) buffer (10 mM Tris-HCl pH 8.0, 150 mM NaCl, 0.5% Tween 20) for 30 min with 5 buffer changes. Secondary antibodies used were: Amersham ECL, HRP-linked anti-mouse (1:10 000 dilution) (GE Healthcare, #NA931-1ML) for BRCA1 and Amersham ECL, HRP-linked anti-rabbit (GE Healthcare, #NA934-1ML) (1:10 000 dilution) for GAPDH.
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2

NF-κB Activation Analysis in PBMCs

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PBMC were stimulated by R848, with or without a pre-incubation step with the S. miltiorrhiza extract, as described above, in 24-well plates at 1 × 106 cells per well. Cells were subsequently lysed for 30 min on ice in 150 µL of the RIPA lysis buffer (50 mM Tris-HCl, pH 7.4, 0.25% sodium deoxycholate, 150 mM NaCl, 1 mM EDTA, 1 mM PMSF, 1 mM Na3 VO4, 1 mM NaF). Lysates were clarified by centrifugation at 4 °C for 10 min at 10,000× g. Equal amounts of lysates were separated by 12% SDS-PAGE and electrotransferred onto a nitrocellulose membrane, subjected to immunoprobing using antibodies to phosphorylated p65NF-κB S536, acetylated p65NF-κB K310 (1:1000, rabbit monoclonal ab, Cell Signaling Technology, Danvers, MA, USA), total NF-κB p65 (1:1000, mouse monoclonal ab, Cell Signaling) or GAPDH (1:1000 rabbit polyclonal ab, Sigma, Saint-Louis, MO, USA). Secondary abs consisted of HRP-conjugated goat IgG anti-rabbit IgG (for p65NF-κB S536, acetylated p65NF-κB K310 and GAPDH; 1:2000, Cell Signaling Technology) or anti-mouse IgG (for total p65NF-κB 1:5000, Sigma). Immunoreactive bands were developed using chemiluminescence (AmershamTM ECL, GE Healthcare, Buckinghamshire, UK) and detected with a Chemidoc XRS apparatus (Bio-Rad, Hercules, CA, USA). The intensity of each band was measured with the densitometry program Quantity One (Bio-Rad).
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3

Insulin-like Growth Factor-I Signaling Pathway

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LipPD1 cells were seeded at a density of 200,000 cells per well, incubated for 48 h and stimulated with 10 nM recombinant human insulin-like growth factor-I (hIGF-I) (Pharmacia Biotech) for 15 min. Cells were lysed with modified RIPA buffer (50 mM Tris HCl, pH 7.4; 1% NP40; 0.25% sodium deoxycholate; 1x Roche complete proteases inhibitor cocktail (Roche); 1 mM EDTA; 1 mM sodium orthovanadate; and 1 mM sodium fluoride). Immunoblots were performed to detect the amount of PTEN, phospho-AKT (Thr308), AKT, phospho-mTOR (Ser2448), mTOR, phospho-p70S6K (Thr389), and p70S6K (New England Biolabs). GAPDH (EMD Millipore) served as loading control. Appropriate secondary antibodies (Dako) were used. Protein bands were detected by Classico Luminata TM (Millipore) or Amersham TM ECL (GE Healthcare Life Sciences). Western blots were quantified using ImageJ densitometry software.
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4

Western Blot Protocol for Protein Analysis

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Cell lysates were prepared by washing once with cold PBS followed by lysis with a modified RIPA buffer containing 25 mM Tris–HCl (pH 7.4), 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 10 mM NaF, 1 % NP-40, 10 % glycerol, 2 mM Na3VO4, and 1X EDTA-free protease inhibitor cock-tail tablets (Roche) as previously described by Chinn et al. (2011) (link). Protein concentration was determined using the Pierce BCA protein assay kit (Thermo Scientific, Rockford, IL, USA) according to the manufacturer’s protocol. SDS-PAGE was performed with 10–25 μg of protein loaded for each sample. Protein was transferred to nitrocellulose membranes (Bio-Rad, Hercules, CA, USA) and probed overnight at 4 °C with the following primary antibodies: phospho-AKT (Ser473) (#4060), AKT (#9272), phospho-ERK1/2 (Thr202/Tyr204) (#4370), ERK1/2 (#4696), EGFR (C74B9, #2646), BIM (#2819), cleaved caspase-3 (#9661; Cell Signaling Technology, Danvers, MA, USA), phospho-EGFR (Tyr1068; #44788G; Invitrogen, Carlsbad, CA, USA), PARP-1 (#sc-8007; Santa Cruz Biotechnology, Santa Cruz, CA, USA), β-actin (#A2228; Sigma-Aldrich, St. Louis, MO, USA). Blots were then incubated for 1 h at room temperature with the HRP-conjugated secondary antibodies, anti-mouse IgG (W4021) and anti-rabbit IgG (W4011; Promega, Madison, WI, USA), and visualized by chemiluminescence with Amersham ECL (GE Healthcare, Buckinghamshire, UK).
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5

MFHR1 Protein Concentration Determination

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The concentration of mossMFHR1 used for activity assays was measured via ELISA, using the same antibodies and protocol performed for mossFH as described above. As standard for the ELISA, a batch of purified mossMFHR1 was used in which its concentration was determined via band densitometry (Quantity One, Bio-Rad, Munich, Germany) after SDS–PAGE (Ready Gel Tris-HCl, Bio-Rad) and Coomassie staining. The sandwich ELISA using this MFHR1 standard protein has a linear response between 1 and 64 ng/ml. Electrophoretic separation of proteins was carried out in 10% SDS–polyacrylamide gels (Ready Gel Tris-HCl; BioRad) at 120 V. Subsequently, gels were stained with PageBlue® Protein Staining Solution (PageBlue™, Thermo Fisher Scientific). For Western blot analysis, SDS-PAGE gel was blotted to polyvinylidene fluoride (PVDF) membranes (Immobilon-P; Millipore, Bedford, MA, USA) in a Trans-Blot SD Semi-Dry Electrophoretic Cell (Bio-Rad) for 1 h with 1 mA /cm2 membrane. Immunoblotting was performed using mouse anti-His antibodies (MAB050, R&D Systems, Minneapolis, MN, USA) as primary and sheep anti-mouse antibodies coupled to peroxidase (NA931, Amersham ECL™, GE Healthcare) as secondary antibody in a 1:500 and 1:10,000 dilution respectively, followed by chemiluminescence development (ECL™ Advance Western Blotting Detection Kit, GE Healthcare) following the manufacturer’s instructions.
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6

Western Blot Analysis of Signaling Pathways

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B16-F10 cells (2 × 106 cells per well) were seeded into a 10 cm dish for 24 h, and then cells were treated with different concentrations of PSS (12.5, 25, 50, 100 μg/mL) for 24 h. The medium was removed, and the cells were washed with PBS three times. Cells were then lysed in 200 μL of lysis buffer on ice. The total protein was determined using the Bicinchoninic Acid (BCA) Kit (Solarbio, Beijing, China). Equal amounts of protein in the cell extracts were fractionated by 10% SDS-PAGE, and then electrotransferred onto polyvinylidene fluoride (PVDF) membranes. After blocking with TBST (20 mM Tris-buffered saline and 0.1% Tween) containing 5% nonfat dry milk for 1 h at room temperature, the membranes were incubated for 2 h with monoclonal antibodies, such as anti-MMP-9, anti-MMP-2, anti-E-cadherin, anti-Vimentin, anti-ERK 1/2, anti-p-ERK 1/2, anti-AKT, anti-p-AKT (Ser473), anti-p38, anti-p-p38, anti-p-p38, anti-NF-κB, anti-p-NF-κB, and anti-β-actin, which were purchased from Cell Signaling Technology. The membranes were then washed three times and incubated with HRP-conjugated secondary antibodies (Abcam, Cambridge, Massachusetts, USA). The proteins were then detected using chemiluminescence agents (Amersham ECL, GE Healthcare, Buckinghamshire, UK).
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7

Immunoblotting of rMVA-infected CEF Cells

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CEF cells (ca. 1 × 106), infected with rMVA at m.o.i. 5 (or mock-infected) were lysed with sample buffer (62.5 mM Tris–HCl, pH 6.8, 2% SDS, 100 mM dithiothreitol, 10% glycerol, 0.1 mg/mL bromophenol blue), and immunoblotting was performed as previously described [9 (link)]. In brief, protein samples were resolved by 10% SDS–PAGE and transferred to nitrocellulose. Reversible Ponceau staining was used as a loading control [27 (link)]. The HAG fusion protein was detected using chicken anti-H1N1 polyclonal antibodies (Istituto Zooprofilattico Sperimentale Tre Venezie, Padova, Italy), and the M1-V5 transgene was detected using the anti-V5 monoclonal antibody V5-10 (Sigma–Aldrich), respectively followed by HRP-conjugated rabbit anti-chicken Ig, or anti-mouse Ig antibodies (DakoCytomation, Denmark A/S). Western blots were developed by enhanced chemiluminescence (Amersham ECL; GE Healthcare, UK) autoradiography.
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8

Subcellular Fractionation and Immunoblotting

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Cytosolic and nuclear fractions were prepared using the NE‐PER Nuclear and Cytosolic Extraction Reagents (Thermo Fisher Scientific) according to the manufacturer's instructions. Sample protein content was determined by the bicinchoninic acid assay protein assay (Thermo Fisher Scientific). Extracts were analysed by SDS–PAGE using a 10% Bis–Tris NuPAGE gels (Invitrogen) and transferred onto PVDF membranes (Millipore). Subsequent to being washed with PBS containing 1% Tween‐20 (PBS‐T), the membranes were blocked in 5% bovine serum albumin (BSA) in TBS‐T for 1 h at RT and then incubated with the primary antibody overnight at 4°C. The membranes were incubated with HRP‐conjugated secondary antibodies for 1 h at room temperature and exposed to X‐ray film (Kodak) after incubation with Thermo Scientific Pierce ECL or Amersham ECL (GE Healthcare). ImageJ software (NIH) was used for the quantification of the bands. All bands were normalised against the loading controls.
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9

TCA-based Yeast Protein Extraction

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Yeast cells were processed using the TCA method. ~4×107 cells were centrifuged and suspended in 500 μl water. 75 μl lysis solution (1.85 M NaOH and 7.5% 2-Mercaptoethanol) was added and incubated for 15 min. Then 75 μl TCA solution (55% Trichloroacetic acid) was added and the mix was centrifuged and the pellets were suspended in the HU buffer (8M Urea, 200 mM Tris-HCl [pH6.8], 1 mM EDTA, 5% SDS, 0.1% bromophenol blue and 1.5% dithiothreitol) and denatured at 60°C. Samples were resolved on a 10% SDS-PAGE gel and transferred onto a 0.2 μm PVDF membrane (Whatman) using a semi-dry method. Antibodies used are listed in the key resources table. Blots were developed by Amersham ECL (GE Healthcare). Images were captured by the Azure c400 Imaging System (Azure Biosystems).
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10

Bax and Bcl2 Protein Expression Analysis

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Aliquots of protein supernatants containing equal amounts of protein and sodium dodecyl sulphate (SDS) reducing buffer were boiled for 5 min. They were then electrophoresed on SDS-polyacrylamide gels and transferred to polyvinyldiene difluoride membranes. The membranes were blocked with 5 % non-fat dry milk and probed with specific primary antibodies of monoclonal anti-Bax and Bcl2 antibodies followed by incubation with peroxidase-conjugated secondary antibodies. The blots were developed with Amersham ECL western blotting kit (GE Healthcare, Amersham Place, Little Chalfont, U.K) according to the manufacturer’s instructions. The blots were quantified by ChemiDoc XRS 4.6.9 (Bio-Rad Laboratories Inc., Hercules, CA, USA.) software and protein loading was corrected for β-actin as loading control.
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