The largest database of trusted experimental protocols

Axiophot microscope

Manufactured by Zeiss
Sourced in Germany, United States, France, Japan, United Kingdom

The Axiophot microscope is a high-performance optical microscope designed for advanced research applications. It features a modular design and offers a range of illumination and imaging techniques, including brightfield, darkfield, phase contrast, and fluorescence. The Axiophot provides excellent image quality and optical performance to support a variety of scientific investigations.

Automatically generated - may contain errors

469 protocols using axiophot microscope

1

Histological Analysis of Tissue Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
The hearts and liver tissues were fixed in formalin, dried through increasing concentrations of alcohol, and embedded in paraffin wax. Two micrometer-thick paraffin slice were cut from paraffin-tissue pieces. The tissue areas were deparaffinized by immersing in xylene also, were rehydrated by decreasing concentration of alcohol. The sections were then stained either for Masson’s trichrome or with hematoxylin and eosin (H and E) and then rinsed with water. Each slide was dried out thoroughly with alcohol. Photomicrographs were obtained using Zeiss Axiophot microscope. For terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL), the tissue sections were treated with proteinase K (2 μg/mL) for 15 min and were then washed in PBS twice. The section were then flooded with 0.1% sodium citrate (with 0.1% Triton X-100), absorbed blocking cradle and washed twice with PBS. The sections were subsequently kept in TUNEL reagent (Roche Applied Science, Indianapolis, IN, USA) for 60 min at room temperature. 4,6-diamidino-2-phenylindole (DAPI) reagent was used to stain the nucleus. The nucleus was fluoresced by blue light at 454 nm and the TUNEL-positive cells fluoresced in brilliant green at 460 nm. Photomicrographs were obtained using Zeiss Axiophot microscope.
+ Open protocol
+ Expand
2

Hematological Analysis of Lizard Parasites

Check if the same lab product or an alternative is used in the 5 most similar protocols
The lizards were restrained manually, and their blood was collected by cardiac puncture into heparinized (100 U mL−1) 1 mL syringes. The blood smears and the impression smears (imprints) of the lungs, brain, heart, kidney, liver, bone marrow and spleen were air-dried, fixed with absolute methanol and stained with 10% Giemsa Methylene Blue Eosin Merck® diluted in distilled water (pH 7.0) for 50 min, according to Eisen and Schall (2000 (link)), to allow analysis of the different parasite forms and stages. The samples were examined, and the infected cells were photographed with a Zeiss Axiophot microscope using a 100× immersion objective. Prevalence was estimated as the proportion of infected hosts, expressed as a percentage. The intensity of parasitaemia in blood monocytes was graded according to Silva et al. (2004 (link)) as negative, low-level infected, medium-level infected and highly infected.
Measurements of the length, width and area of the gamonts and host cells (infected and uninfected) were performed. Morphometric data are presented in micrometres (μm), and for each metric, the averages, ranges and standard deviations were also calculated. Measurements of cells were carried out using a 100× oil immersion objective on a Zeiss Axiophot microscope, calibrated with a stage micrometre. Unstained samples were analysed by differential interference contrast (DIC) microscopy.
+ Open protocol
+ Expand
3

Immunohistochemistry of Mouse Testes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Testes were dissected from wildtype adult (8 week old) C57B/6J mice and fixed in 10% neutral buffered formalin for 8 hrs at room temperature. Fixed testes were then washed 4 x in 70% ethanol, embedded in paraffin and sectioned onto glass slides at a thickness of 5 μM. Slides were rehydrated in safeclear followed by decreasing percentages of ethanol (100%, 95%, 80%, 70%, 50%, 30%), washed with deionized water, and then boiled in sodium citrate buffer (10mM Sodium Citrate, 0.05% Tween 20, pH 6.0) for 20 minutes. Following subsequent cooling and washes in PBS, slides were blocked in blocking buffer (1 x PBST (1X PBS + 0.1% Triton), 1% BSA, 3% Goat Serum) for an hour and primary antibody dilutions incubated on the sections for two hours at 37°C. Slides were washed in PBST and incubated with fluorescence-conjugated secondary antibodies for one hour at 37°C, washed with PBST and then mounted using a DAPI/Antifade mix. Slides were imaged on a Zeiss Axiophot microscope with Zen 2.0 software. Each image shown is a single z-slice. Antibody concentrations used can be found in supplemental table 1.
+ Open protocol
+ Expand
4

DNA Damage Analysis via Comet Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The degree of the DNA damage was analyzed by means of the DNA-comet assay using alkaline conditions. As the basis, it was used a special protocol of the aforementioned micromethod developed by the German company “Trevigen, Inc.,” including minor modifications. In order to prepare the slides, the cell suspension in a 1% solution of the low-melting-point agarose was applied onto a “base” made of the normal-melting-point agarose (NGA). The electrophoresis was performed at the current of 9-12 mA (0.7-1.5 V/сm) for 20 min, followed by fixing the slides in a 96% ethanol. In order to visualize the DNA comets, the slides were stained with PI (Sigma) (2 μg/mL in PBS). The quantitative parameters were measured using an Axiophot microscope (Zeiss) and DCM 300 digital video camera (Russia). 200-400 nuclei per each slide were analyzed. The software package СometScore v. 1.5 (supplied by TriTek Corp., http://tritekcorp.com) facilitated the comet assay performance. In order to analyze the DNA comets, such quantitative characteristic as the comet tail moment was used (resulting from multiplying the comet's tail length by the DNA percentage in the tail).
+ Open protocol
+ Expand
5

Histological Evaluation of Hepatic Architecture and Lipid Accumulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Spleens, kidneys, and one portion of each liver were placed in 10% formalin and stored at 4°C for 24 hours, then transferred to 70% ethanol. Samples were embedded in paraffin and sectioned for Hematoxylin and Eosin (H&E) staining to assess hepatic architecture. A second portion of each liver was placed in Optimum Cutting Temperature (OCT) medium (Fisher Scientific, Pittsburgh, PA) and frozen in liquid nitrogen. Samples underwent frozen sectioning and oil red O staining to assess hepatic fat accumulation. Visualization was with a Zeiss Axiophot microscope (Oberkochen, Germany). Slides were analyzed by a board-certified pathologist who was blinded to the treatment groups. A third portion of each liver was flash-frozen in liquid nitrogen and stored at -80°C for gene and protein expression analysis.
+ Open protocol
+ Expand
6

Immunohistochemical Characterization of Paraffin-Embedded Tissues and PDOs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Five µm sections of paraffin-embedded tissues and PDOs were stained with haematoxylin and eosin (H&E) and immunohistochemistry staining was performed with appropriate primary monoclonal rabbit anti-human antibodies: WT1 (clone 6F-H2, Roche Diagnostics, Indianapolis, IN), PAX8 (PAX8-EP331), p53 (clone Bp53-11 Roche), anti-CINtec ® Histology Kit (p16) (Roche) using the UltraView Universal DAB Detection Kit on the ULTRA instrument (Ventana) BenchMark. For cytokeratin 7 (CK7; clone OV-TL 12/30 DAKO/AGILENT) and CK20 (Clone Ks20.8 DAKO/AGILENT) staining was performed on the Bond III automated immunostainer (Leica Microsystems, Bannockburn, IL). Appropriate positive and negative controls were included. The selected antibodies are well-established in the diagnostic routine laboratory, signals were clearly visible and captured by ordinary light microscope (Zeiss AxioPhot Microscope). Scores were performed by an expert pathologist.
+ Open protocol
+ Expand
7

Immunohistochemistry of Microglial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissues were fixed overnight in 4% paraformaldehyde and then cryoprotected in sucrose solutions (15%, then 30% in PBS) followed by embedding in OCT (Tissue-Tek; 4583) and frozen at −80°C. 10-μm-thick cryosections were cut using a Cryostat (Leica). Sections were thawed, re-hydrated in PBS, blocked 1h at room temperature with blocking buffer (1% BSA and 0.03% Tritin-X100 in PBS), incubated with primary antibody (Iba1, Novus Biologicals, NB100-1028) overnight at 4°C in a humid chamber, washed with PBS, incubated with Alexa594-conjugated secondary antibody (anti-goat, Molecular Probes, A11058) 1h at room temperature, washed and mounted using VECTASHIELD antifade mounting medium with DAPI (Vector, H-1200). Images were acquired with a Zeiss Axiophot microscope with AxioVision software and analyzed with ImageJ.
+ Open protocol
+ Expand
8

Intestinal Morphometric Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Morphometric measurements of intestinal variables were carried out on 2 slides per animal's intestine, 2 sections per slide and 5 fields per section. The morphometric measurements taken from the intestinal histological sections included villus length and width, intestinal crypt depth and quantification of goblet cells. Digital images were captured with an Axiophot microscope (Carl Zeiss, Thornwood, NY) fitted with high resolution Power shot G6 7.1 megapixels digital camera (Canon INC, Japan). Digital image analysis and morphometric measurements were performed with Axio vision AxioVs40 V4.6.3.0. software (Carl Zeiss, Göttingen, Germany). Later, apparent absorptive surface area was calculated using the following formula according to Iji et al. (2001) (link).
+ Open protocol
+ Expand
9

Tissue Preparation and Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue samples for sections were fixed overnight in 4% paraformaldehyde and embedded in paraffin wax. Antibodies and labelling procedures are described in the Supplementary Material. Image analysis was performed using a Leica TCS SP5 confocal microscope (fluorescence microscopy) or a Zeiss Axiophot microscope equipped with a Zeiss AxioCam HRc camera (haematoxylin and eosin and Herovici staining).
+ Open protocol
+ Expand
10

Ultrastructural analysis of mouse retina

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice were euthanized with isoflurane and fixed by intracardiac perfusion. The primary fixative was 2% formaldehyde and 2.5% glutaraldehyde in 0.1 M sodium phosphate buffer, pH 7.4. A cautery burn marked the superior pole of the cornea for orientation before enucleation of the eye. After removal of the anterior segment, the eyecup was cut into temporal and nasal hemispheres. The nasal hemisphere was trimmed into superior and inferior quadrants. These quadrants and the hemisphere from each eye were immersed in a secondary fixative, 1% osmium tetroxide dissolved in 0.1 M sodium phosphate buffer. This was followed by dehydration in a graded series of alcohols. The quadrants were embedded in Araldite 502 (Electron Microscope Sciences). Ultrathin sections were cut on a Leica Ultracut microtome, picked up on 200 mesh copper grids, and double stained with uranium and lead salts. The sections were viewed and imaged on a Zeiss 910 electron microscope. The temporal hemisphere was embedded in an Epon-812 (Tousimis Research Corporation)/Araldite mixture. The sections were cut at 1μM thickness on the same microtome, picked up on a glass slide and stained with 1% toluidine blue in 1% sodium borate. Images were collected with a Zeiss Axiophot microscope fitted with a 40 x oil-immersion objective lens and CoolSNAP digital camera.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!