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30 protocols using anti cd3 apc h7

1

Multiparametric Flow Cytometry Analysis of Lymphocyte Subsets

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The following antibodies were used for flow cytometric analysis of lymphocyte subsets and intracellular cytokines: Anti-CD3-APC-H7 (BD Biosciences). Anti-CD4-Brilliant Violet 421, Anti-CD8a-Percp-cyanine 5.5, Anti-CXCR3-Percp-cyanine 5.5, Anti-CCR4-PE, Anti-CCR6-APC, Anti-PD-1- PE (Biolegend), Anti-CD45-FITC, anti-IFNγ-eFluor®450, Anti-IL4-APC, Anti-IL17-PE (eBioscience), FcR Blocking reagent (Miltenyi Biotec MACS). Fixable viability stain 510, Leukocyte Activation cocktail, with BD Golgiplu (BD Biosciences). Red Blood Cell Lysis Buffer (Solarbio Life Science). Human Lymphocyte Separation Medium (TBD Science). Cytometric Bead Array (BD Biosciences). RPMI1640 (Hyclone).
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2

Quantifying PKC Isozyme Expression

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The expression of PKC isozymes was assessed as described previously [12 (link)]. Briefly, either whole blood or 2 × 105 CBMCs were incubated with anti-CD3 APC-H7 and anti-CD8 PE-Cy7, both from BD Biosciences (Franklin Lakes, NJ, USA) for surface staining for 15–20 min. The cells were then fixed with BD Cytofix/Cytoperm (BD, 555028) and permeabilized with NET-Gel. Furthermore, 1 µg of mouse/rabbit IgG Fc blocking reagent was added for 10 min. The optimal amount of fluorochrome-conjugated anti-PKC isozymes antibodies or isotype controls (Table 2) were added as appropriate. After 30 min of incubation at room temperature (RT) in the dark, the cells were washed twice. They were then analysed on a FACSCanto II (BD Biosciences, NJ, USA).
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3

Cellular Activation Measurement for HIV

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Cellular activation was assessed by measurement of HLA-DR and CD38, similar to previous studies (12 (link), 36 (link), 37 (link)). Staining for flow cytometry was performed both extracellularly and intracellularly. The extracellular staining cocktail consisted of LIVE/DEAD Amcyan fixable dye (Thermo Fisher Scientific, Waltham, MA, USA), anti-CD3-APC-H7, anti-CD4-BV605, anti-CD8-BV655, anti-CD14-Pacific blue (all from BD Biosciences, Franklin Lakes, NJ, USA), and anti-CD19-pacific blue (Biolegend, San Diego, CA, USA). The intracellular staining cocktail consisted of anti-CCR5-APC, anti-HLA-DR-PerCP-CY5.5 (all from BD Biosciences, Franklin Lakes, NJ, USA), anti-CD38-PE-CY7 (Biolegend, San Diego, CA, USA) and anti-p24-FITC (Beckman Coulter, Brea, CA, USA). PBMCs were collected at two time-points: day 3 (48 h post stimulation and prior to HIV infection) and day 5 (48 h post infection).
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4

Cytotoxicity Assay for Multiple Myeloma

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As the source of effector cells, we used both PBMCs and BM samples derived from MM patients at different state disease and PBMCs from healthy donors. K562 were used as target cells that were co-incubated with effector cells in complete medium at 2.5:1 effector/target (E/T) ratio for 2 h at 37 °C and 5% CO2 [11 (link)]. In some experiments, different human cell lines such as SKO-007(J3), ARK and ARP and primary malignant plasma cells were used as targets. Thereafter, cells were washed with PBS/2% FCS and stained with the lysosomal marker CD107a/APC (BD Biosciences, San Jose, CA) and anti-CD3/APC-H7, anti-CD56/PE, anti-CD45/PE-Cy7, anti-CD16/PerCP for 45 min at 4 °C. All the samples were acquired using a FACSCanto II (BD Biosciences, San Jose, CA) and data analysis was performed using the FlowJo 9.3.2 program (TreeStar, Ashland, OR, USA).
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5

Quantifying CD38 and HLA-DR on CD8+ T cells

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To quantify the expression of CD38 and HLA-DR on CD8+ T cells, cryopreserved PBMC were thawed and stained with the following antibodies: anti-CD3 APC-H7, anti-CD4 PECF594, anti-CD8 APC, anti-CD38 BB515, and anti-HLA-DR PE (BD Biosciences, United States), and acquired using a BD FACSAria IIu Flow Cytometer (BD Biosciences, United States). The Fixable Viability Stain 450 (FVS 450-BD Biosciences, United States) was used to exclude non-viable cells. Flow cytometric analyses were performed with FlowJo v.10.0.7 (Tree Star Inc., Ashland, OR, United States). Plasmatic levels (pg/mL) of IP-10, IL-18, RANTES, CTACK, and PDGF-AA were measured using the human Magnetic Luminex Performance Assay (R&D systems, United States), following manufacturer’s instruction and the analyses were performed on a Luminex 200 System (Luminex, United States).
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6

Comprehensive Immune Profiling by Flow Cytometry

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Single cell suspensions of leukocytes from blood, ascites, tumor or omental metastases were stained with the following monoclonal antibodies: anti-CD3 APC-H7 (BD Pharmingen, 560176), anti-CD4 eFlour 450 (eBioscience, 48-0048-42), anti-CD8 Pacific Orange (Invitrogen, MHCD0830), anti-CD25 APC (BD Pharmingen, 555434), or anti-CTLA-4 APC (BD Pharmingen, 555855), anti-CD28 PerCpCy5.5 (eBioscience, 45-0289-42), anti-CD38 PE-TR (Invitrogen, MHCD3817), anti-HLA-DR PE-Cy7 (BD Biosciences, 335795), anti-FoxP3 PE (eBioscience, 12-4777-42), anti-ki67 FITC (BD Pharmingen, 556026) or CD39 FITC (BD Pharmingen, 561444) or anti-Helios (Biolegend, 137214). Cells were stained in FACs buffer (1%FBS in PBS with 0.01%NaN3) and fixed according to the ebioscience FoxP3 Fix-Perm kit protocol (eBioscience, 00-5521-00). All samples were run on a BD LSRII Flow cytometer and analysed by FACSDiva BD. Briefly, for every single flow cytometric antibody, we have used Fluorescent Minus One (FMO), to discriminate between positive and negative cells [35 (link)].
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7

CD4+ T-cell Isolation and Activation

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Blood was drawn into Sodium Heparin tubes (APP Pharmaceuticals, NDC 63323-540-11); CD4+ cells were isolated from whole blood using anti-CD4 Microbeads (Miltenyi Biotec) and MS column purification as per manufacturer’s instructions. A small portion of the cell isolate was set aside for flow cytometry using anti CD3 APC-H7 and anti CD4 PE-Cy7 (BD Pharmingen) to assess purity. Isolated cells were re-suspended at 1 million/ml in RPMI containing 10% FBS and either immediately lysed in 0.7 ml QIAzol lysis reagent (Qiagen) or incubated for 4 hours at 37°C with 25 µl/ml anti-CD3/anti-CD28 Human T-Activator Dynabeads (Invitrogen) prior to lysis. Lysates were stored at −80°C until processing for RNAseq.
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8

Activated MAIT Cell Functional Assay

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PBMCs (1 × 106cells/well) were incubated with or without i6-FP (100 μM) for 30 minutes in RPMI 1640, and incubated for 16 hours in 100 μM of 7-methyl-8-D-ribityllumazine (RL-7-Me) synthesized as previously described.9 (link) GolgiPlug (0.67 μg/ml, BD Biosciences) was also added for the final 16 hours. The cells were stained using a Zombie Yellow Fixable Viability Kit (BioLegend), and combinations of the following monoclonal antibodies were used for the cell-surface and intracellular staining: anti-CD3-APC-H7 (BD Biosciences), anti-CD19-V500 (BD Biosciences), hMR1 tetramers loaded with 5-OP-RU-BV421 (NIH tetramer core facility at Emory University), IFN-γ-PE-Cy7 (eBioscience), and anti-TNF-α-PE-Cy7 (BD Biosciences). All data were acquired on a FACS LSRFortessa (BD Biosciences) and analyzed by FlowJo software (TreeStar Inc).
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9

Inhibitory Receptor Expression on Cytokine-Producing T Cells

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For staining of inhibitory receptors, stimulated PBMCs were surface stained with anti-CD4 (V500; BD Biosciences), anti-CD3 (APC-H7; BD Biosciences), anti-CD8 (Alexa Fluor 405; Invitrogen), anti-PD-1 (FITC; BD Bioscience) and anti-human TIM-3 antibody (PE; R&D Systems) for 30 min at 4°C. Cells were washed, fixed, permeabilized (Invitrogen), and intracellularly stained with anti-IFN-γ (PE-Cy7; BD Biosciences), anti-IL-2 (BV605; BD Biosciences), and anti-CTLA-4 (APC; BD Biosciences) for 30 min at 4°C, washed and fixed with 1% formaldehyde. Cells were analyzed using a LSR-II flow cytometer (BD Immunocytometry Systems). One million events were collected. Electronic compensation was performed with Ab capture beads (BD Biosciences) stained separately with individual monoclonal Abs used in the test samples. The data files were analyzed using Diva (BD) and FlowJo Software (Treestar, Co). The expression of TIM-3, PD-1 and CTLA-4 was examined on cytokine-producing cells with frequencies ≥0.03% above the background (media control tube) to ensure an adequate number of events for analysis as previously validated by our laboratory [15 (link)–18 (link)]. Flourescence minus one (FMO) controls were used to set the gates for determining the mean fluorescent intensity (MFI) of TIM-3, PD-1 and CTLA-4 on Gag-responsive T cells expressing IFN-γ or IL-2.
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10

Quantification of Antigen-Specific CD8+ T Cells

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Co-cultures containing peptide-pulsed DCs and PBMCs at a ratio of 1:10 (final concentrations 2 × 105 DCs/ml and 2 × 106 PBMCs/ml) were harvested after 1 week. Cultures with DCs that had not been peptide-pulsed served as controls. T cells specific for the MelanA peptide were detected with HLA-A0201-PE ELAGIGILTV tetramer (produced in house according to Rodenko et al.34 (link)). Harvested cells were stained with the tetramer for 15 min, then anti-CD3-APC-H7, anti-CD4-AlexaFluor700, anti-CD8-PE-Cy7, anti-CD56-BV421, anti-CD16-FITC, anti-CD69-APC, and anti-CD27-BUV395 (all from BD Bioscience) were added and incubated for another 20 min. After washing twice with phosphate buffered saline, cells were acquired on a FACS Fortessa (BD Bioscience). CD8+ T cells and NK cells were distinguished and characterized via expression of CD3, CD56, CD8, and CD69. The gating strategy is depicted in Supplemental Figure S8.
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