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212 protocols using facsvantage se

1

Annexin V-FITC Assay for Apoptosis

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A detection kit containing Annexin V-fluorescein isothiocyanate and propidium iodide (PI), which determines translocation of phosphatidylserine to the cell surface, was utilized to quantify the amount of apoptotic cells. First, 5×104 HepG2 cells were allowed to adhere in six-well plates. After exposure to Ccn suspension, Ccn-BNPs, or Ccn-BNP-GA for 24 hours, the apoptotic and live cells were harvested by centrifugation (at 1,000 rpm for 5 minutes). Cells in the sediment were then resuspended in 1.5 mL of PBS and stained with Annexin V-fluorescein isothiocyanate and PI according to the manufacturer’s instructions. The number of apoptotic cells was monitored by measuring the fluorescence of the cells with an FCM instrument (BD FACS Vantage SE). Live, early apoptotic, late apoptotic, and necrotic cells are designated as Z1, Z2, Z3, and Z4, respectively.
For analysis of the cell cycle, the drug-treated cells were washed, collected by centrifugation (1,000 rpm, 5 minutes), fixed in chilled 70% ethanol, and labeled with PI and RNase. The samples were analyzed by FCM (BD FACS Vantage SE).
A competitive binding experiment was also performed, which involved preincubation of 135.73 μmol/L free GA for 2 hours, with addition of Ccn-BNP-GA to each well at a predetermined time point. The subsequent procedure was the same as that as described in the assessment of apoptosis and cell cycle.
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2

Flow Cytometry Analysis of Immune Cells

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According to the manufacturer’s instructions, the digested cells were washed with PBS and incubated with flow cytometry antibodies CD11b and CD206 for 20 min in the dark, followed by washing with PBS and resuspension on the machine. Finally, the CellQuest software version 7.5.3 (FACS Vantage-SE, BD Immunocytometry Systems, San Diego, CA) was employed to analyze the cells by multicolor flow cytometry. The flow cytometry gating strategies are depicted in Additional file 3.
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3

Multicolor flow cytometry immunophenotyping

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Cells were stained with fluorochrome-conjugated monoclonal antibodies against human CD206 (Cat. No. 12–2069, eBioscience, San Diego, CA; 1.25 μg ml−1), human CD36 (Cat. No. 11–0396, eBioscience; 2.5 μg ml−1) and mouse CD206 (Cat. No. MA5–16870, Thermo; 2.5 μg ml−1), and subsequently analysed by multicolour flow cytometry using CellQuest software version 7.5.3 (FACSVantage-SE, BD Immunocytometry Systems, San Diego, CA).
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4

Multicolor Flow Cytometry Analysis

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The peripheral blood monocytes, liver monocytes and LMFs were stained using fluorochrome-conjugated antibodies targeted against CD14, CD163, CD31, CD45, CD34 or control antibodies (eBioscience, San Diego, CA, USA) according to the manufacturer’s instructions. The cells were subsequently analyzed using multicolor flow cytometry (FACS Vantage-SE, BD Immunocytometry Systems, San Diego, CA, USA).
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5

Isolation and Characterization of Atrial Myocytes

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Atrial myocytes were detached with 5 mM ethylenediaminetetraacetic acid (EDTA), washed, and then resuspended in PBS supplemented with 1% heat-inactivated fetal calf serum (FCS). Cells were stained with fluorochrome–conjugated human antibodies against CD16/32 and CD206, or control antibodies, and analyzed by flow cytometry using CellQuest software package (FACS Vantage-SE, BD Immunocytometry Systems, San Diego, CA, U.S.A.).
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6

NK Cell-Mediated Cytolytic Assay

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The NK cells were tested for cytolytic activity via killing assays. Briefly, the purified NK cells derived from healthy donors were cultured with rhIL-2 in the presence or absence of fibroblasts. K562 cells were used as target cells (a generous gift from Dr. Dongjun Lin, Leukemia Research Institute of Sun Yat-sen University) and cocultured with NK cells for 2 hours at 37°C in 96-well V-bottom plates (2 × 104 K562 cells per well). Thereafter, the target cells were stained with 5 μL annexin V (AV)-FITC and propidium iodide (PI), according to Kurschus et al. [28 (link)], and incubated in the dark for 15 minutes at room temperature. The cells were analyzed using multicolor flow cytometry (FACS Vantage-SE, BD Immunocytometry Systems, San Diego, CA, USA). Apoptotic and dead cells were identified by annexin V and PI staining. The lytic potential of the NK cells was tested by plating cells at different effector-to-target cell (E/T) ratios.
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7

Cell Cycle Analysis by Flow Cytometry

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In the flow cytometry analysis, cells were fixed with 70% ethanol and then stained with propidium iodide (PI) using a CycleTest Plus DNA Reagent Kit (Becton Dickinson Immunocytometry Systems, San Jose, CA, USA), according to the instructions of the manufacturer, and samples were analyzed by flow cytometry (FACSVantage SE, Becton Dickinson Immunocytometry Systems). The population of cells in each cell cycle phase was determined with CellQuest TM software.
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8

Flow Cytometry Analysis of CD11b and CD206

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According to the manufacturer's instructions, the digested cells were washed with PBS and incubated with ow cytometry antibodies CD11b and CD206 for 20 min in the dark, followed by washing with PBS and resuspension on the machine. Finally, the CellQuest software version 7.5.3 (FACS Vantage-SE, BD Immunocytometry Systems, San Diego, CA) was employed to analyze the cells by multicolor ow cytometry.
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9

Identifying Stem-Like Cells via FACS

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The procedure for SP analysis is based on procedures previously described [11 (link)–13 (link)]. Cells were sorted using dual-wavelength analysis with BD FACS Vantage SE (Becton, Dickinson and Company, Franklin Lakes, NJ). The SP gate was defined as the diminished area on the dot plot in the presence of fumitremorgin C (FTC).
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10

Genome Size Estimation Protocol

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In total five samples containing six animals, each were collected for genome size estimation. Schmidtea mediterranea was used as a reference sample of known genome size. Frozen samples were homogenized briefly in Galbraith buffer (45 mM MgCl2, 30 mM Sodium citrate, 20 mM 3-(N-morpholino) propanesulphonic acid (MOPS), 0.1% v/v Triton X-100) with a motorized pestle. Homogenized samples were passed sequentially through a 70 μm and then 40 μm mesh. Nuclei were pelleted by centrifugation, resuspended in 1× PBS with 50 μg/ml propidium iodide, 200 μg RNAse A, and incubated for 2 h on ice, prior to data acquisition. Flow cytometry data were acquired on BD FACSVantage SE (Becton Dickinson) and analyzed using FlowJo software Macintosh version 8.1.1 (Tree Star).
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