The largest database of trusted experimental protocols

Research microscope dm ire2

Manufactured by Leica
Sourced in Germany

The Leica Research Microscope DM IRE2 is a high-performance microscope designed for research applications. It features a modular design that allows for customization to meet specific research needs. The microscope provides high-quality optics and advanced imaging capabilities to support a wide range of scientific investigations.

Automatically generated - may contain errors

10 protocols using research microscope dm ire2

1

Epifluorescence Microscopy of Axonal Lengths

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Leica Research Microscope (DM IRE2) equipped with I3 S, N2.1 S, and Y5 filter systems (Leica Microsystems AG, Germany) was used for epifluorescence microscopy. Images (1388 × 1039 pixels) were acquired using a high-resolution CoolSNAP CCD camera (Photometrics Inc., USA) and Leica FW4000 software. Digital images were processed using Adobe Systems Photoshop 7.0 software (Adobe, USA). Axonal lengths were measured with Image J (version 1.45) software using the simple neurite tracer plug-in (National Institute of Health, USA).
+ Open protocol
+ Expand
2

Imaging and Morphometric Analysis of Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
Images (1,388×1,039 pixels) were acquired by phase-contrast and epifluorescence microscopy using a Leica Research Microscope DM IRE2 (Leica Microsystems AG, Wetzlar, Germany) equipped with a high-resolution charge-coupled device camera (CoolSNAPTM, Photometrics Inc., Tucson, AZ, USA) and Leica FW4000 software (Leica Microsystems AG). DiO stained or immunostained cells were observed under a 100× oil immersion objective lens. FM1-43 stained presynaptic vesicles were observed under a 40× objective lens. The digital images were processed using Adobe Photoshop CS6 (Adobe Inc., San Jose, CA, USA) and analyzed using ImageJ software (version 1.45, National Institute of Health, Bethesda, MD, USA) for morphometric assessment, arbitrary intensity values assessment, and quantification. Filopodia were morphologically identified as dendritic protrusions with a long slender structure, without a head, and of a length of more than 2 μm, whereas spines were classified as dendritic protrusions with a bulbous head attached to dendrites by a narrow stalk with a length of less than 2 μm (Harris and Spacek, 2001 ). The number of primary neurites (NPN), total length of primary neurites (TLPN), and length of the longest neurite (LLN) were measured for morphometric studies of early development.
+ Open protocol
+ Expand
3

High-Resolution Microscopy of Cellular Structures

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Leica Research Microscope DM IRE2 equipped with I3 S, N2.1 S, and Y5 filter systems (Leica Microsystems AG, Germany) and a high-resolution Cool- SNAP CCD camera (Photometrics Inc., USA) was used to take phase-contrast and epifluorescence images. Confocal images (1024 × 1024 pixels) were acquired using a 100X oil-immersion lens using a Leica TCS SP2 confocal system with 488, 543, and 633 nm laser lines. Image contrast and brightness were optimized using Adobe Systems Photoshop 7.0 software.
+ Open protocol
+ Expand
4

Epifluorescence and Confocal Microscopy Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Leica Research Microscope DM IRE2 equipped with I3 S, N2.1 S, and Y5 filter systems (Leica Microsystems AG, Germany) was used for epifluorescence microscopy. Images (1388 × 1039 pixels) were acquired using a high-resolution CoolS-NAP CCD camera (Photometrics Inc., USA) under the control of a computer running Leica FW4000 software. Confocal images (1024 × 1024 pixels) were acquired using a Leica TCS SP2 confocal system with laser lines at 488, 543, and 633 nm. Digital images were processed using Adobe Systems Photoshop 7.0.
+ Open protocol
+ Expand
5

Epifluorescence Microscopy for Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Leica Research Microscope DM IRE2 equipped with I3 S, N2.1 S and Y5 filter systems (Leica Microsystems AG, Wetzlar, Germany) was used for epifluorescence microscopy. Images (1388 × 1039 pixels) were acquired using a high-resolution CoolSNAP CCD camera (Photometrics, Tuscon, AZ, USA) using Leica FW4000 software. Digital images were processed with Adobe Systems Photoshop 7.0 software (Adobe, San Jose, CA, USA).
+ Open protocol
+ Expand
6

Quantitative Phase-Contrast and Epifluorescence Microscopy

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Leica Research Microscope DM IRE2 equipped with I3 S, N2.1 S, and Y5 filter systems (Leica Microsystems AG, Wetzlar, Germany) was used for phase-contrast and epifluorescence microscopy. Images (1388 × 1039 pixels) were acquired using a high-resolution CoolSNAPTM CCD camera (Photometrics, Inc., Tucson, AZ, USA) under the control of a computer running Leica FW4000 software (Leica Microsystems AG, Wetzlar, Germany). Digital images were processed using Adobe Illustrator CC 2015 (Adobe Systems, Inc., San Jose, CA, USA). The quantifications of cells or puncta were performed using ImageJ (version 1.49, National Institute of Health, Bethesda, MA, USA) software with the cell counter plugin (National Institute of Health, Bethesda, MA, USA). Gel imaging was processed using the AlphaImagerTM HP system (www.alphainnotech.com).
+ Open protocol
+ Expand
7

Fluorescence Microscopy Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
An Olympus microscope BX53 was used to take the fluorescence images containing DAPI staining. A Leica research microscope (DM IRE2) (Leica Microsystems AG, Wetzlar, Germany) was used for taking fluorescence images in Figure 5 and Figure 6. Figure 3E,F were made by confocal microscopy (Leica TCS SP8 microscope and LAS X software, Leica Microsystems, ver. 2.0.2.15022) [81 (link)], using the facilities of the Advanced Neural Imaging Center of the Korean Brain Research Institute (KBRI). We used Adobe Systems Photoshop 7.0 software (Adobe, San Jose, CA, USA) for processing digital images.
+ Open protocol
+ Expand
8

Quantitative Analysis of Synaptic Vesicle Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Leica Research Microscope DM IRE2 equipped with I3 S, N2.1S, and Y5 filter systems (Leica Microsystems AG, Wetzlar, Germany) and a high-resolution CoolSNAP TM CCD camera (Photometrics Inc., Tucson, AZ, USA) was used for phase-contrast and epifluorescence microscopy, through Leica FW4000 software. The digital images were processed using Adobe Photoshop 7.0 software. Quantitative analysis of staining intensity of FM1-43 labeled recycling synaptic vesicles, and VgulT1, GlunN2b Puncta per 50 μm length of dendrite was meansured respectively by fluorescence intensity of individual stained punctae with Image J (version 1.45) (National Institute of Health, Bethesda, MD, USA) and puncta analyzer [27] software .
+ Open protocol
+ Expand
9

Microscopic Imaging Workflow for Research

Check if the same lab product or an alternative is used in the 5 most similar protocols
Images (1,388 × 1,039 pixels) were captured using a Leica DM IRE2 research microscope equipped with I3 S, N2.1S, and Y5 filter systems (Leica Microsystems AG, Wetzlar, Germany) and a high-resolution CoolSNAP™ CCD camera (Photometrics, Munich, Germany) under the control of a computer using the Leica FW4000 program. The digital images were processed using Adobe Photoshop 7.0 software (Adobe, San Jose, CA, USA).
+ Open protocol
+ Expand
10

In Vivo Electroporation of Postnatal Mouse Brain

Check if the same lab product or an alternative is used in the 5 most similar protocols
Electroporation was essentially performed as described by Ito et al.38 (link). In brief, postnatal day 1 (P1) ICR mice were anesthetized by hypothermia, and then skin and skull were pierced with a sharp glass microcapillary containing a solution of plasmid [pEGFP-Q74 (3 μg/μl), pEGFP-Q74 (3 μg/μl) + pDsRed2 (2 μg/μl), or pEGFP-Q74 (3 μg/μl) + pDsRed2-NAGK (2 μg/μl)] in Tris-EDTA buffer containing 0.5% Fast Green. DNA solution (2 µl) was injected into lateral ventricles (LVs), and injected brains were immediately electroporated with a tweezers-type electrode using an ECM 830 electroporator (BTX, USA). Five pulses of 100 V of 50 ms duration were administered with a 950 ms pause between pulses. Electroporated animals were placed on a hot pad at 37 °C for several minutes and then returned to their mother. Pups were anesthetized by hypothermia 2 days later, and brains were isolated, fixed for 2 h at RT in 4% (w/v) PFA, washed in PBS, and incorporated into agarose (5%) blocks, which were then sectioned (30 μm) with a vibratome (DTK-2000 Microslicer, Dosaka EM Co., Kyoto, Japan). Sections were mounted on slides and images were acquired using a Leica DM IRE2 Research Microscope (Leica Microsystems AG, Wetzlar, Germany). Experiments were approved beforehand by the Institutional Animal Care and Use Committee of the College of Medicine, Dongguk University.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!