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13 protocols using infinite m200 pro multimode reader

1

Amyloid Inhibition Assay with AChE

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Recombinant human AChE (2419 U mg−1), expressed in human embryonic kidney (HEK) 293 cells, lyophilised powder (E.C. No. 3.1.1.7), equine BuChE (≥500 U mg−1), acetylthiocholine (ATC) iodide, butyrylthiocholine (BTC) iodide, 5,5′-dithiobis(2-nitrobenzoic acid) (DTNB), donepezil, tacrine hydrochloride (A79922), propidium iodide (P4170), dimethyl sulfoxide (DMSO), methanol (MeOH) and ethanol (EtOH), di-sodium hydrogen orthophosphate dodecahydrate (Na2HPO4·12H2O), sodium dihydrogen orthophosphate (NaH2PO4·2H2O), sodium hydroxide (NaOH), thioflavin T, glycine, and hydrochloric acid (HCl) 37% were purchased from Sigma-Aldrich (St. Louis, MO, USA). β-Amyloid (Aβ) peptide (1–40) and Aβ peptide (1–42), lyophilised from HFIP solution were purchased from Anaspec (Fremont, CA, USA). The chemicals were of analytical grade. Instruments used included a UV/fluorescence spectrophotometer and multiplate reader, Infinite® M200 PRO multimode reader (Tecan Group Ltd., Männedorf, Switzerland), workstation and molecular modelling software.
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2

Cultivation and Maintenance of Pseudomonas savastanoi

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The bacterial strains used in this study are listed in Table S1. Pseudomonas savastanoi pv. nerii strain Psn23 and its mutants were routinely grown at 26 °C on King’s B (KB) [26 (link)] or hrp-inducing minimal medium (MM) [27 (link)], while Escherichia coli strains TOP10 and ER2925 were grown on Luria-Bertani (LB) [28 ], as liquid or agarized cultures. Bacterial growth in liquid media was monitored by measuring optical density (OD) at 600 nm (OD600) with a spectrophotometer (Infinite® M200 PRO Multimode Reader, Tecan Group Ltd., Männedorf, Switzerland), while the concentration of viable bacteria was evaluated by plate counts and expressed as colony forming units per milliliter (CFU/mL). For long-term storage, bacteria were maintained at −80 °C on 40% (v/v) glycerol, and P. savastanoi cultures were periodically monitored by using specific PCR-based assays to exclude any bacterial contamination [29 (link),30 (link)]. Antibiotics were added to growth medium if needed, and used at the following final concentrations: 20 µg/mL streptomycin, 50 µg/mL nitrofurantoin, 10 µg/mL gentamicin, and 50 µg/mL kanamycin.
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3

DNA Genotyping Protocol for Genetic Studies

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A biological sample was obtained from each participant using the Oragene DNA saliva collection kit (OG-500; DNA Genotek Inc, Ottawa, ON, Canada). DNA extraction was performed by using standard procedures. DNA concentration was measured by absorbance using the Infinite® M200 PRO multimode reader (Tecan US Inc, Research Triangle Park, NC, USA).
Genotyping was performed using TaqMan® OpenArray™ Genotyping System (Thermo Fisher Scientific, Waltham, MA, USA) following the manufacturer’s instructions. Raw data were analyzed with the TaqMan® Genotyper v1.2 software (Thermo Fisher Scientific).
Stringent quality control criteria were applied to both SNP and individual data. SNPs were excluded if they had a missing genotype rate higher than 1% or showed departure from the Hardy–Weinberg equilibrium (P<0.01). Individuals with genotypic data showing a missing rate >10% or those with a non-European ancestry were also excluded.
After quality control procedures, 85 SNPs and 567 individuals were finally included in the analyses. Detailed information about those SNPs, such as location, function, or possible allelic variants, is given in Table S1.
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4

Cell Viability Assay Using Resazurin

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Anticancer
activities of the compounds were determined by resazurin assay.62 (link),63 (link) This assay is a quantitative fluorometric method used for determination
of cell viability. Resazurin is a blue dye used as an oxidation–reduction
indicator in cell viability assays and is itself weakly fluorescent
until it is irreversibly reduced to the pink colored and highly red
fluorescent resorufin. Resazurin is effectively reduced in mitochondria
in the presence of NADH dehydrogenases. NADH is the reductant that
converts resazurin to resorufin. The reduction of resazurin correlates
with the number of live cells. The cells were plated in 96-well plates
at a density of 1 × 104 cells in 100 μL of medium per well
of the 96-well plate. Cells were treated with 10 μM concentration
of test compounds for 48 h. After the incubation period the supernatant
was aspirated, and cell monolayers were washed with Dulbecco’s
phosphate-buffered saline (DPBS). The assay was terminated with the
addition of 50 μL (50 μg/mL) of resazurin dye for 1 h.
The O.D. was measured at 560 nm for resorufin since resazurin exhibits
an absorption peak at 590 nm using a Tecan infinite M200 pro Multimode
reader.
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5

Cytotoxicity Evaluation of Polymers

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The cytotoxicity of polymers was measured using the MTT assay protocol described previously [17 (link), 18 (link)]. Briefly, ScN2a cells were plated in a 24-well culture container and incubated for 6 days with polymers to be tested. The cells were incubated for additional 2 h with DMEM containing 0.5 mg/ml MTT. Purple MTT formazan products extracted in 0.05 N HCl-isopropanol were quantified by colorimetric readouts at 570 nm with background subtraction at 650 nm using Infinite M200Pro Multimode Reader (Tecan, Männedorf, Switzerland).
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6

Plasma AOPP Quantification

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Plasma AOPPs were determined using spectrophotometric detection according to (Witko-Sarsat et al., 1996 (link)) with minor modifications. Two hundred μL chloramine T-solution (0–200 µM) or 200 μL of plasma diluted 1:5 with PBS were mixed with 10 µL 1.16 M potassium iodide and 20 µL acetic acid. The absorbance at 340 nm was measured immediately using an Infinite M200 PRO multimode reader (TECAN, Männedorf, Switzerland).
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7

Measuring Caspase-3 and Caspase-7 Activity

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The activity of caspase 3 and 7 was detected using the Caspase-Glo 3/7 Assay (Promega, Mannheim, Germany). The cells were seeded in white walled 96-well plates at a density of 15,000 cells per well and allowed to attach. Twenty-four hours after plating cells were treated in triplicate with 0.5 µM staurosporin and DMSO as solvent control (0.5 %). Caspase-3 and -7 activities were determined after 12 h after staurosporin treatment according to the manufacturer’s protocol. Caspase-Glo 3/7 reagent was added (25 µl/well), gently mixed, and incubated for 30 min. The assay is based on the cleavage of a proluminogenic substrate, containing a DEVD sequence, by the caspases 3 and 7 which generates a luminescent signal produced by luciferase. Luminescence, that is proportional to the amount of caspase activity present, was measured using an Infinite M200 PRO multimode reader (Tecan, Männedorf, Switzerland).
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8

Dual-Luciferase Assay for KLF4 3'UTR

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p-MIR reporter plasmid containing 3′UTR of KLF4 and plasmid containing the mutated sequence of KLF4 were purchased from Addgene. Dual-luciferase assay was performed using the DLR assay kit (Cat # E1910, Promega, Madison, WI, USA) as per the manufacturer’s protocol using plasmid expressing the Renilla luciferase gene (pRL, Promega, Madison, USA, 20 ng) as a control. Luciferase activity was assayed on an InfiniteM200 Pro Multimode Reader (TECAN, Seestrasse, Männedorf, Switzerland). Relative fold change in luciferase activity was estimated, following normalization to Renilla luciferase activity.
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9

CHO Cell Transfection and Validation

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CHO cells were cultured in F12 medium (Hyclone) supplemented with 10% FBS (Gibco) and Pen-Strep antibiotics (Hyclone) at 37 °C in 5% CO2. Commercial pDisplay plasmid with C-myc tag at the C-terminal of the cloned gene of interest was transfected into CHO mammalian cells using Lipofectamine LTX & Plus reagent (Invitrogen) in 6 wells plates according to manufacturer’s protocol. 24 hr post transfection, medium was replaced with fresh medium including G418 drug (1.8 mg/ml) (Hyclone) to select for transfectants. Subsequently, the cells were expanded and subcloned by single cell dilution. Clones were then validated by IFA in 96 wells plate as follow: cells were fixed with 1% paraformaldehyde, 15 min at 37 °C and washed with PBS. The cells were then incubated for 1hr at 37 °C with chicken anti-C-myc antibody (Abcam) or rat anti-pooled CIR antibodies and/or rat preimmune serum (1:10 diluted in PBS 3% BSA). After washing 3 times with PBS, secondary Alexa 594 goat anti-chicken (ImmunoJackson) or Alexa 488 goat anti-rat (Biolegend) (1:600 and 1:500 dilution respectively in PBS 3% BSA) was incubated for 1hr at 37 °C. Nuclei was stained with Hoechst 33342 (1uM in PBS). The fluorescence signal was quantified using the fluorescence plate reader, Infinite M200 PRO multimode reader (TECAN).
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10

Glutathione Redox Status Analysis

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The concentration of reduced (GSH) and oxidized (GSSG) glutathione, as well as the ratio between GSSG/GSH, was determined in monocytes’ samples using OxiSelect™ assay (STA-312; Cell Biolabs, San Diego, United States) according to the manufacturer’s instructions. An infinite M200 PRO multimode reader (TECAN, Männedorf, Switzerland) was utilized for recording the absorbance. Level of glutathione components, intermediates in the glutathione synthesis, and molecules involved in glutathione components: L-cysteine, L-glutamic acid, L-glycine, γ-L-glutamyl-L-cysteine, L-cysteinyl-L-glycine, 5-oxo-L-proline, and L-ornithine, were determined using GC-MS analysis. GPX3 was quantified using the MRM approach as described above.
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