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9 protocols using anti gst b 14

1

Dual-tag Affinity Purification of PKD Proteins

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PKD355–206 with an N-terminal GST tag and PKD148–198 and PKD2 (PKD242–190) with a C-terminal His6 tag were (co-)transformed into BL21*. Proteins were (co-)expressed and lysed, and GSH affinity purification was carried out as described above. The cleared lysate and GSH beads were probed for containing proteins by Western blotting using anti-GST antibody (anti-GST (B-14), Santa Cruz Biotechnology, Inc.) and anti-His antibody (THETM anti-His, GenScript) as recommended by the supplier.
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2

Immunoblotting and Immunoprecipitation Protocols

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For immunoblotting, the following antibodies were used as indicated: anti-GST B-14 (Santa Cruz, sc-138) 1:1000 dilution; anti-GFP B-2 (Santa Cruz, sc-9996) 1:1000 dilution; anti-HA F-7 (Santa Cruz, sc-7392) 1:1000 dilution; anti-myc 9E10 (Santa Cruz, sc-40) 1:1000 dilution. For immunoprecipitation, anti-HA 3F10 (Roche, No. 11867431001) 4 μg ml-1 was used.
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3

Antibodies for Cell Signaling Analysis

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Rabbit polyclonal antibodies: anti-TOPK (H-152), anti-pH3S10 (-R), anti-YY1 (H414), anti-Sp1 (PEP 2), anti-Mst1/2(anti-Krs-1/2 C-19), and mouse monoclonal antibodies: anti-TOPK (A-3), anti-Tubulin (B-7), anti-Cyclin B1 (GNS1), anti-Lamin A/C (636), and anti-GST (B-14) were purchased from Santa Cruz Biotechnology. Anti-Aurora A mouse monoclonal antibody (35C1) was purchased from Invitrogen. The rabbit polyclonal antibody anti-HpTGEKP was raised against the phospho-epitope: Ac-C(Ahx)HpTGEKP-amide and was purified at New England Peptide. The specificity of this antibody to its target linker sequence and its phosphospecifcity was previously characterized [19 (link)].
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4

Characterization of MDM2, p73, and Ubiquitin Interactions

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GST-MDM2, p21-Luc, pCMV-Bam-MDM2, and MDM2ΔRING have been described previously [20 (link), 21 ]. Myc-Mdm2 was kindly provided by Dr. Jochemsen. All Ub and Ub mutants were PCR-amplified and subcloned into pET28a. The mouse Mdm2 was also cloned into pcDNA3 and confirmed by sequence. Flag-p73α, p73β, and p73 mutants were generated by PCR and subcloned into pCMV-Tag1 (Stratagene). p73α and p73β were also cloned into pcDNA3 without tag. All PCR products were confirmed by sequencing. Anti-p73 (Ab-1 and Ab3, Oncogene Science; H-79, Santa Cruz Biotechnology; ab40658, Abcam), anti-MDM2 (2A10, Calbiochem; SMP14, Santa Cruz Biotechnology; MD-219, Sigma), anti-Myc (9E10, Roche), anti-Flag (M5, Sigma), anti-GFP (B-2, Santa Cruz Biotechnology), anti-GST (B-14, Santa Cruz Biotechnology), anti-HA (12CA5, Roche), anti-ubiquitin (BD Bioscience), anti-actin (Sigma), anti-CD20 (Pharmingen), and polyubiquitin-specific FK-1, anti-ubiquitin, Lys63-specific and Lys48-specific antibodies (Millipore) were used according to the manufacturers’ instructions.
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5

Comprehensive Western Blot Protocol

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Western blot procedures were as previously described (31 (link)). Briefly, membranes were blocked in PBST containing 3% milk for 1 hour at 20°C. Primary antibodies in PBST containing 3% milk were incubated at 4°C rocking overnight. The following morning membranes were washed 3x with PBST followed by the addition of secondary antibody in PBST containing 3% milk at 20°C for 2 hours. Membranes were then washed 3x with PBS. All western blot figures are representative data of at least 2 independent replicates. Band intensities were calculated using ImageJ (32 (link)). Antibodies used are: anti-p53 (1C12, Cell Signaling, Danvers, MA), anti-actin (Sigma), anti-GST (B-14, Santa Cruz, Dallas, TX), anti-His (Omni-probe D-8, Santa Cruz), anti-eIF4E (P-2, Santa Cruz), anti-p21 (H164, Santa Cruz), anti-p130 (A-10, Santa Cruz), anti-vinculin (7F9, Santa Cruz), anti-MDM2 (SMP14, Santa Cruz), and anti-HA (Covance, San Diego, CA).
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6

Antibody-based Western Blot Analysis Protocol

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Antibodies used for Western blot analysis included the following: anti-C1orf55/SDE2 (epitope: a.a. 318–410; Sigma-Aldrich), anti-GFP (JL-8, Clontech), anti-HA (6E2, Cell Signaling), anti-pCHK1 (S317, Cell Signaling), anti-Actin (Cell Signaling), anti-CDT1 (Cell Signaling), anti-Flag (M2, Sigma-Aldrich), anti-Tubulin (Sigma-Aldrich), Cyclin E (H-12, Santa Cruz), anti-PCNA (PC-10, Santa Cruz), anti-Vinculin (H-300, Santa Cruz), anti-GST (B-14, Santa Cruz), Cyclin A (H-432, Santa Cruz), anti-γH2AX (JBW301, Millipore), anti-CDT2 (Bethyl), anti-pRPA (S33, Bethyl), pKAP-1 (S824, Bethyl), anti-ORC2 (BD Pharmingen), and anti-MUS81 (MTA30 2G10/3, Abcam). Mitomycin C, camptothecin, hydroxyurea, cycloheximide, aphidicolin, and Z-Leu-Leu-Leu-al (MG132) were purchased from Sigma-Aldrich. Rucaparib (AG-014699) was purchased from Selleckchem. MLN4924, ubiquitin vinyl sulfone, and ubiquitin aldehyde were purchased from Boston Biochem. Drugs were used at the concentrations indicated in the figure legends.
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7

CD3 Stimulation and GST-TSAd SH2 Pulldown

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The following mAb were used; anti-human CD3ϵ (OKT3, American Type Culture collection, Manassas, VA), anti-GST (B-14,Santa Cruz Biotechnology, Santa Cruz, CA), anti-phosphotyrosine (anti-pY) (clone 4G10, Upstate Biotechnology, Lake Placid, NY), and horseradish peroxidase-conjugated goat-anti mouse IgG mAb (Sigma-Aldrich). Pull-down experiments using anti-CD3 stimulated Jurkat E6.1 cells (American Type Culture Collection) and GST-TSAd SH2 fusion proteins on glutathione sepharose beads were performed as previously described [9 (link)].
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8

Purification of Mouse VDAC1 and RNF207 Proteins

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GST-fused protein of mouse VDAC1 was expressed in XL-10 cells using the pGEX6P-1 plasmid vector (GE Healthcare) and then purified by reduced glutathione-sepharose beads (GE Healthcare). His 6 -Flag-tagged mouse RNF207 proteins including deletion mutants were expressed in Rosetta blue cells with the use of the pET30 plasmid vector (Novagen, Madison, WI) and then purified with the use of ProBond metal affinity beads (Invitrogen).
For the production of recombinant proteins in Sf9 cells, we subcloned full-length mouse Rnf207 cDNAs into pFastBac HTc with epitope tags and expressed epitope-tagged full-length mouse Rnf207 with the BAC-to-BAC system (Clontech Laboratories, Mountain View, CA). Baculovirus infections, culture and affinity purifications were performed as described previously [29] . In vitro binding assays were performed as described previously [30] 2.9. Antibodies
We used anti-FLAG M2 antibodies (Sigma), anti-HA antibodies (Covance, Princeton, NJ), anti-VDAC1 antibodies (ab14734, Abcam, Cambridge, UK), anti-GST (B-14, Santa Cruz Biotechnology, Santa Cruz, CA), anti-PARP, anti-GAPDH (Cell Signaling Technology [CST], Danvers, MA) and anti-HSP90 (BD Transduction Laboratories, San Diego, CA).
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9

Characterizing EZH2-VAV1 Protein Interaction

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EZH2-HIS 201-252 and EZH2 with individual mutations were immobilized on the His-Pur Cobalt resin and allowed to interact overnight with GST-VAV1-172 or GST alone (control) in PBS buffer pH 7.4. Following this, the beads were extensively washed and subject to SDS-PAGE and Western blot analysis using anti-His (h-3, Santa Cruz) and anti-GST (B-14, Santa Cruz) antibodies from Santa Cruz to analyze the EZH2-VAV complex. To determine the interaction between full-length EZH2 and VAV, VAV1 protein was immunoprecipitated from the cytosolic fraction of Jurkat cells with α-VAV1 antibody from Santa Cruz (C-14) and immobilized on Protein G Sepharose. Similarly, Flag-tagged EZH2 WT or EZH2 with individual mutations were immunoprecipitated from HEK-293 cells with α-Flag antibody from Sigma (M2) and Protein G Sepharose beads. They were then eluted from the beads by using a competing FLAG peptide. Equal quantities of the WT EZH2 or EZH2 with individual mutations were incubated overnight with VAV1 in a BC-100 buffer. The beads were then extensively washed and analysed by Western blotting with α-EZH2 antibodies from Santa Cruz (N-20) and VAV-specific antibodies.
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