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38 protocols using calcein am

1

Quantifying Cancer Cell Invasion Using Matrigel-Coated Inserts

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The PET membranes (8 µm pore size) of FluoroBlok™ cell culture inserts (351152, Corning, NY, USA) were coated with 90 µL of diluted Matrigel (0.3 mg/ml) (356234, Corning), and incubated at 37 °C for 2–3 hours until solidified. Next, 1 × 104 of 4T1, BT20 or MDA-MB231 cells suspended in serum-free DMEM media were seeded on the solidified Matrigel layer. Then, 700 µL of chemo-attractant medium (DMEM, 1% P/S and 10% FBS) was added to the lower chambers (353504, multiwell 24 well companion plate, Corning), and the plate was incubated in a 37 °C incubator. After 24 hours of incubation, the insert bottoms were dipped in 1X PBS and stained in diluted Calcein AM (354217, Corning) in PBS for 10 min. Fluorescence images of invaded cells were captured with an EVOS inverted microscope, and analysis was done with ImageJ software.
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2

Viability and Morphology of Encapsulated Cells

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The viability and morphology of encapsulated IDG-SW3 cells were assessed using a live/dead assay based on Calcein AM (Corning), which stains the cytosol of live cells, and ethidium homodimer (Corning), which enters the nucleus of compromised cells and stains DNA. Hydrogels were incubated with 4 μM Calcein AM and 2 μM ethidium homodimer for 10 minutes. The GFP expression could not be distinguished from the cytosolic stain of Calcein, but the latter will stain all live cells. Qualitative assessment of dead cells was not affected by GFP expression. Intact hydrogels were imaged by confocal microscopy (Zeiss LSM 5 Pascal system using a Zeiss Axiovert microscope).
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3

Endothelial Cell Tube Formation Assay

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The procedure was followed and modified as previously reported [35 (link)]. Briefly, human umbilical vein endothelial cells (HUVECs, ATCC, Cat# CRL-1730) were incubated with endothelial cell medium (ECM) (Sciencell Research Laboratory, CA, 1001) at passage 6–8 when the cells reached to 80–100% confluency. Then, the cells were trypsinized and resuspended in the following conditions: tenfold diluted CM from an infertile patient and a volunteer, M199/0.5% BSA as a negative control, and M199/0.5% BSA with recombinant VEGF (5 ng/ml) as a positive control. The cells were then seeded in 96-well plates (Corning, USA) pre-coated with 30 μl growth factor reduce (GFR) Matrigel (Corning, USA, 354230) at a density of 2 × 104 cells/well. After 18–20 h, gels were stained with Calcein AM (Corning, USA) to quantify covered area using fluorescence microscopy (BZ-X700, KEYENCE, Japan). Each experiment was performed in triplicate.
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4

Quantifying Endothelial Cell Angiogenesis

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EA.hy926 ​cells (1.2 ​× ​105 ​cells/well, containing 0, 3, 10, 30 ​nM CuB) was seeded on Matrigel (Corning, USA)-coated 24-well plate for 12 ​h. Cells were labeled by Calcein AM (Corning, USA) in HBSS (Gibico, USA) and incubated plates for 30 ​min at 37 ​°C. Images were captured using a fluorescent microscope (Zeiss, Germany), then quantified using Angiogenesis Analyzer plugin of ImageJ software (NIH, USA).
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5

Matrigel-Coated Invasion Assay for Metastatic Cancer Cells

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The PET membranes (8 µm pore size) of FluoroBlok™ cell culture inserts (351152, Corning, NY, USA) were coated with 90 µL of diluted Matrigel (0.3 mg/mL) (356234, Corning), and incubated at 37 °C for 2–3 h until solidified. Next, 1 × 104 of 4T1, BT20 or MDA-MB231 cells suspended in serum-free DMEM media were seeded on the solidified Matrigel layer. Then, 700 µL of chemo-attractant medium (DMEM, 1% P/S and 10% FBS) was added to the lower chambers (353504, multiwell 24 well companion plate, Corning), and the plate was incubated in a 37 °C incubator. After 24 h of incubation, the insert bottoms were dipped in 1× PBS and stained in diluted Calcein AM (354217, Corning) in PBS for 10 min. Fluorescence images of invaded cells were captured with an EVOS inverted microscope, and analysis was done with ImageJ software.
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6

Transwell migration and wound healing assay

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Wound healing assay was performed as described previously [22 (link)]. Transwell assay were performed using 24-well permeable supports with 8-μm pore (Corning, NY). After 24 h incubation, cells that had migrated into the lower surface of the filter were stained with 0.05 % crystal violet or fluorescent dye Calcein AM (Corning) according to the manufacturer’s instructions. The fluorescence was read by fluoroskan ascent microplate fluorometer (Thermo Scientific).
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7

Ferroptosis Induction in Transfected Cells

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5000 FT-t cells were transfected with siRNA for 48 h. Afterwards, cells were treated with 0.5 μM of RSL3 (Selleckchem) in presence or absence of 2 μM ferrostatin-1 (Selleckchem) for 24 h. Cell viability was assessed using calcein-AM (Millipore), a fluorescent dye that stains living cells. Briefly, cells plated in 96 well black-walled plates (Corning) were incubated with 2 uM calcein-AM for 30 min at 37°C in a humidified incubator at 5% CO2. Fluorescence was measured in a fluorescent plate reader (BioTek, Synergy2) using 480/520 nm excitation/emission (Stoddart, 2011 ).
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8

Cell Migration Assay using Cultrex

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Cells were seeded into the top chamber of a Cultrex® Cell Invasion/Migration Chamber (Trevigen, Gaithersburg, MD) at a density of 5 X 104 cells per well in 50 μL of basal media with either SB216763 1μM or an equivalent amount of DMSO. Lower chambers were filled with 150 μL of basal media. The migration chamber was incubated for 24 hours. The chambers were aspirated and washed per manufacturer instructions using supplied wash buffer. A cell dissociation solution with Calcein-AM (Corning, Corning, NY) was then placed in the lower chambers and the migration chamber was placed back in the incubator for 30 minutes. The top chamber was then removed, and fluorescence intensity was determined using a Biotek Synergy HT microplate reader.
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9

Live Staining of hMSC on GelMPs

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Live staining was done after 14 days incubation of hMSC on GelMPs/in GelMA using Calcein-AM. Briefly, cells were stained with Calcein-AM (1 μM in PBS, Corning Inc., Corning, NY, USA) for 30 min at room temperature, washed with PBS and visualized using fluorescence microscope (Echo Revolve, San Diego, CA, USA).
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10

Assessing Post-Thaw Cell Viability

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Live/Dead assay was performed after thawing the cells to evaluate the post-thawing rate survival, using calcein AM/propidium iodide (PI) staining. At predetermined timepoints, cell monolayers were incubated for 20 min at 37 °C in the presence of calcein AM (0.25 μM, Corning) and then at room temperature for 5 min with PI (20 μg/mL, EMD Millipore Corp., Burlington, MA, USA). Then, cells were washed with PBS and analysed in an inverted microscope (Axio Vert A1, Zeiss, Oberkochen, Germany).
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