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4 protocols using α myc 9e10

1

Antibody Characterization in Toxoplasma

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The antibodies used in this study were previously described as follow: polyclonal rabbit: α-MyoA and α-MLC1 (ref. 59 (link)), α-GAP40, α-IMC1 and α-GAP45 (ref. 9 (link)), α-MLC2 (ref. 28 (link)), α-Cpn60 (ref. 32 (link)), α-catalase60 (link), α-ARO12 (link), α-HSP70 (ref. 40 (link)); monoclonal mouse, α-ACT59 (link), α-ISP1 (ref. 61 (link)), α-Ty (BB2, ref. 62 (link)). α-SAG1, α-MIC2, α-GRA1, α-GRA3 and α-P21 are generous gifts from Dr J.-F. Dubremetz. For WB, secondary peroxidase-conjugated goat α-rabbit/mouse antibodies (Sigma) were used, as well as α-Myc (9E10, Santa Cruz Sc-40). For IFA, the secondary antibodies Alexa Fluor 488- and Alexa Fluor 594-conjugated goat α-mouse/rabbit antibodies (Life Technologies) as well as the DBA-fluorescein labelled (Reactolab FL-1031) were used. The dilutions of use are described in Supplementary Table 3.
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2

Western Blot of Parasite Proteins

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Western blot was performed as previously described51 (link). Lysate from 5×106 parasites was loaded in 12% Bis-Tris gel (Invitrogen), transferred to PVDF membrane (Bio-rad), blocked in 5% milk and probed with rabbit α-human GAPDH antibody conjugated with horse radish peroxidase (HRP) (TGR BioSciences) at 1:500, or α-Myc (9E10) conjugated with HRP (Santa Cruz Biotechnologies) or α-IMC1. Following 1 hr incubation the membrane was washed 3 times with PBS containing 0.1% Tween40 for 10 min and once with PBS for 5 min. Signals were detected using chemiluminescent HRP substrate (Millipore) and exposure on X-ray film.
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3

Comprehensive Antibody Characterization for Molecular Biology

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Antibodies used in this study include αm6A (Millipore, ABE572 or MABE1006) for MeRIP/m6A-seq and MeRIP-qPCR, αHMBOX1 (Novus Biologicals, NBP1-31316) for ChIP-qPCR and immunoblotting, αγH2AX (JBW301, Millipore, 05-636) for immunofluorescence-FISH and Western blot, αTPP1 (Proteintech, 25849-1-AP) for immunoprecipitation (IP) and immunoblotting, and αTRF2 (Proteintech, 66893-1-Ig) for immunofluorescence-FISH. Other antibodies that were applied in Western blot analysis include αMETTL3 (Proteintech, 15073-1-AP), αMETTL14 (Sigma-Aldrich, HPA038002), αALKBH5 (Sigma-Aldrich, HPA007196), αHA (16B12) (BioLegend, #901501), αmyc (9E10) (Santa Cruz Biotechnology, sc-40), αHis (Proteintech, #66005-1), αCRISPR-Cas9 (Abcam, ab191468), αAR (H-280) (Santa Cruz Biotechnology, sc-13062), αYTHDF2 (Proteintech, 24744-1-AP), αYTHDC2 (Proteintech, 27779-1-AP), αp53 (DO-1) (Santa Cruz Biotechnology, sc-126), αp21 (Cell Signaling Technology, #2947), αMDM2 (Proteintech, 19058-1-AP), αTelomerase reverse transcriptase (TERT) (Abcam, ab32020), and αβ-actin (Sigma-Aldrich, A5441). Reagents that were used in IP, ChIP, and MeRIP are Protein A/G Plus Agarose (Santa Cruz Biotechnology, sc-2003) and Dynabeads Protein A (Thermo Fisher Scientific, #10006D) or Protein G (Thermo Fisher Scientific, #10007D) immunoprecipitation kit.
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4

Western Blot Analysis of Epitope-Tagged Proteins

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Western blots were performed as described previously [61 (link)]. Following SDS-PAGE, proteins were transferred onto PVDF membrane using Trans-Blot Turbo Transfer Kit (Biorad) and blocked in 5% milk in TBS-T (50mM Tris-HCl, 150mM NaCl, 0.1% Tween20, pH 8.0) at 4°C for at least 1 hour. Respective primary HRP-conjugated antibodies (α-FLAG: Cohesion Biosciences, CPA9020; α-HA: Invitrogen, #26183-HRP; α-V-5: Invitrogen, #MA5-15253-HRP; α-Myc (9E10): Santa Cruz Biotechnology, SC-40) were applied for overnight incubation (4°C). Membranes were then rinsed with TBS-T. Proteins were detected using ECL Extreme reagents (Expedeon) in chemiluminescence CCD camera (ImageQuant LAS 500).
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