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8 protocols using tris buffered saline tween 20

1

Western Blot Analysis of Myelination Markers

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Total protein of OPC/DRG cocultures was extracted using TNE buffer supplemented with proteinase inhibitor (Roche), separated by SDS-PAGE (200 V; ∼30-40 min) and transferred to PVDF membrane using an iBlot quick transfer dry blot system (Life Technologies). Protein blots were blocked with 5% nonfat milk powder in Tris-buffered saline/Tween 20 (TBST; 50 mm Tris, 150 mm NaCl, 0.05% Tween 20, all from Sigma-Aldrich) for 5-10 min, followed by three rinses with TBST. Blots were subsequently probed with antibodies against myelin proteins MBP (1:50; catalog #AB980, Millipore Bioscience Research Reagents), Myelin oligodendrocyte glycoprotein (MOG) (1:50; catalog #MAB5680, Millipore), or BMPRIA (1:200; catalog #38560, Abcam) overnight at 4°C. An antibody against β-actin (1:5000 in TBST + 2% BSA; catalog #A5441, Sigma-Aldrich) was also added as an internal loading control. Following three rinses with TBST, blots were incubated with HRP-conjugated secondary antibodies (1:5000; Cell Signaling Technology).
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2

Western Blot Analysis of Epithelial-Mesenchymal Transition Markers

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The protein from tissues and cells was extracted using RIPA buffer (Sigma Aldrich) and then was quantified using the protein assay kit (Bio-Rad Laboratories, Hercules, CA, USA). The protein samples (50 μg/lane) were separated by SDS-PAGE and then electrotransferred onto nitrocellulose membrane (Millipore, Bedford, MA, USA). After blocking with 5% nonfat dry milk for 2 hours in Tris-buffered saline-Tween 20 (Sigma Aldrich) at room temperature, the membranes were incubated with the primary antibodies against N-cadherin (ab18203; Abcam, Cambridge, UK), E-cadherin (ab76055; Abcam), and TWIST1 (ab50581; Abcam) or β-actin (ab8227; Abcam) overnight at 4°C. Thereafter, the membranes were incubated with appropriate horseradish peroxidase-conjugated secondary antibodies (ab6789; Abcam). Protein bands were detected by the enhanced chemiluminescence system (PSC Biotech Pte., Ltd., Singapore, Singapore).
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3

Notch Signaling in Osteoclast Differentiation

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Ex-vivo generated osteoclasts from WT and dnMAML mice were Notch stimulated via immobilized Jagged1 (R&D systems, 1277-JG-050) after a 24 hr pre-exposure to either MCSF alone or MCSF + RANKL. IgG was used as a control (Jackson labs, 109-001-008). After 2 hr of Jagged-1 stimulus, protein levels of NICD (Cell Signaling Technology, 5732) were measured using Western blotting as per the procedure described earlier [30 (link)]. Briefly, cells were lysed using RIPA lysis buffer containing 50 mM Tris, 150 mM NaCl, 1% NP-40, 0.5% Sodium deoxycholate, 0.1% SDS, 5 mM EDTA, 1 mM Na orthovanadate, 1 mM PMSF and Protease inhibitor cocktail. 10 μg protein was loaded on 8% SDS-PAGE gel and then electroblotted to PVDF membranes. The membranes were processed by blocking buffer (Licor, 927–50000) and subsequently incubated with primary and secondary antibodies (Licor, IR dye 680 RD 925–68070 and IR dye 800 CW 925–32211) with intermittent washings using Tris-Buffered Saline-Tween 20 (Sigma). Beta-tubulin (Sigma, T7816) was used as a loading control. Signal detection was done using the Odyssey® CLx Imager.
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4

Immunohistochemical Analysis of Phosphorylated AKT and PRAS40

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All tissue specimens were fixed for 16–24 hours in 10% neutral buffered formalin (NBF) and embedded in paraffin. Immunohistochemistry (IHC) was performed on tumor tissue sections (5 μm thick) with anti-human antibodies p-AKT(S473) and p-PRAS40(T246). After deparaffinization and rehydration of the tissue sections, antigen retrieval was conducted in a decloaking chamber for 30 minutes at 95°C, followed by 10 seconds at 90°C using citrate buffer (pH 6, Poly Scientific, Bay Shore, NY). IHC was performed using a Labvision 480 autostainer (Thermo Fisher Scientific). Rabbit on Rodent HRP-Polymer (Biocare Medical, Concord, CA) was used as a secondary antibody. Primary antibodies were diluted in 1% BSA in Tris-buffered Saline-Tween 20 (Sigma Aldrich). Tissue sections were incubated with primary antibody for 30 minutes and then with polymer for 25 minutes at ambient temperature. The reagent 3,3’-diaminobenzidine (DAB) was used as the chromogen and the slides were counterstained with hematoxylin after IHC. Images were captured using an Aperio Scanscope (Aperio, Vista, CA).
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5

Immunohistochemical Analysis of R. australis

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After fixation, tissues were embedded in paraffin, sectioned, and stained for immunohistochemical analysis. Antigen unmasking was performed by treatment with sodium citrate buffer at pH 6, and tissue sections were stained for R. australis using rabbit polyclonal Abs against rickettsiae and ATG5 (catalog number NB110-53818; Novus). Biotinylated secondary Abs (Vector Labs) were diluted in Dako Ab diluent (catalog number S3022; Dako). The tertiary reagents and streptavidin-alkaline phosphatase were diluted in the same Dako diluent, as were the primary Abs (73 (link)). All washes were with Tris-buffered saline–Tween 20 (Sigma). Sections were dehydrated before synthetic glass coverslips were mounted with Permount mounting medium. All the sections were photographed with an Olympus DP71 camera (Olympus, Center Valley, PA, USA) attached to an Olympus Ix71 inverted microscope (Olympus, Tokyo, Japan) utilizing ×20 objectives.
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6

Isolation and Characterization of Novel Cadalene Derivatives

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RPMI 1640 medium, gentamicin, trypsin, phosphate-buffered saline (PBS) and fetal bovine serum (FBS) were acquired from Gibco (Invitrogen, Carlsbad, CA, USA). Isolated compounds 7-hydroxy-3,4-dihydrocadalene (>98.0%), 7-(phenylcarbamate)-3,4-dihydrocadalene (77% yield) and 7-(phenylcarbamate)-cadalene (79% yield) were generously provided by Dr. Guillermo Delgado Lamas (Instituto de Química, UNAM). Their isolation or preparation and structural characterization are described by Egas et al. (2017) (link).
Dimethyl Sulphoxide (DMSO), H2O2, 2′,7′-Dichlorofluorescein Diacetate (DCFH-DA), 3-(4,5-Dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide (MTT), Bovine Serum Albumin (BSA), 2-thiobarbituric acid, antimycin A, oligomycin, rotenone, RIPA buffer, phosphatase inhibitor cocktails, bicinchoninic acid reagent, Tris Buffered Saline-Tween 20, GAPDH antibody (G-8795), caspase 3 (sc-7148) and Bcl-2 (sc-492) antibodies were purchased from Sigma-Aldrich (St. Louis, MO, USA). Protease inhibitor cocktail from Roche (Lewes, UK). Polyvinylidene difluoride (PVDF) membranes from GE Healthcare (Buckinghamshire, UK).
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7

Western Blot Analysis of Kidney Tissue Proteins

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Kidney tissues were lysed in radioimmunoprecipitation (Beyotime) assay lysis buffer containing phenylmethylsulfonyl fluoride (Solarbio). Protein concentrations were determined using a bicinchoninic acid assay. Protein samples were separated on a 30% sodium dodecyl sulfate–polyacrylamide gel at 120 V and then transferred to nitrocellulose membranes (Pall Corporation) using a Turbo Transfer System (Bio‐Rad). Membranes were blocked for 1 h at 25 °C and then incubated with the appropriate primary antibodies at 4°C overnight, followed by washing three times with Tris‐buffered saline‐Tween 20 (Sigma Aldrich). Membranes were then incubated with horseradish peroxidase‐conjugated secondary antibodies for 2 h at 25°C and washed with Tris‐buffered saline‐Tween 20. Protein bands were visualized using chemiluminescence with ECL Plus (#P1050; Applygen) according to the manufacturer's instructions. The primary antibodies used in our study were as follows: TGF‐β1 (1:1000, #21898; Proteintech), α‐SMA (1:1000, #55135; Proteintech), Smad3 (1:1000, #ab52903; Abcam), p‐Smad3 (1:1000, ab40854; Abcam), and glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH; 1:1000, #10494‐1‐AP; Proteintech).
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8

Western Blot Analysis of Ovarian Proteins

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Western blotting was performed according to a previous method [36 (link)]. Protein isolation from mouse ovaries and GCs was performed using the RIPA lysis buffer (R0020, Solarbio). A BCA protein assay kit (PC0020, Solarbio) was used to measure the protein concentration. The protein samples were denatured at 100°C for 10 min. Then, the proteins were separated by sodium sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene difluoride (PVDF) membranes. The membranes subsequently were blocked using 5% skimmed milk for 1 h at room temperature. After blocking, the membranes were incubated overnight with primary antibodies against CD63 (ab134045, 1 : 1000; Abcam), calnexin (ab133615, 1 : 1000; Abcam), HBP1 (ab216844, 1 : 1000; Abcam), T cell factor (TCF; ab272235, 1 : 1000; Abcam), lymphoid enhancer factor (LEF; ab137872, 1 : 1000; Abcam), p-GSK3β (ab68476, 1 : 1000; Abcam), histone H3 (ab1791, 1 : 1000; Abcam), GSK3β (ab185141, 1 : 5000; Abcam), β-catenin (ab184919, 1 : 1000; Abcam), and GAPDH (ab9485, 1 : 2500; Abcam). The next day, the membranes were washed three times using Tris-buffered saline Tween-20 (Sigma-Aldrich) and incubated with secondary antibodies at room temperature for 1 h. The protein level was detected using the ChemiDoc MP Imaging System (Bio-Rad, Hercules, CA, USA).
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