The largest database of trusted experimental protocols

8 protocols using cd8 bv650

1

Multiparameter Flow Cytometry for Detecting Antigen-Specific T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies were used: cluster of differentiation (CD)4 BV605, CD8 BV650, CCR7 PE-CF594 (Becton Dickinson), CD45RA PECy7, CD28 BV421, CD127 BV711, PD-1 PerCP-Cy5.5, CD95 APC, CD62L BV785 (BioLegend, Dedham, MA), CD3 AF700, CD45RO FITC, CD27 APC-ef780 (eBioscience, San Diego, CA). The dead cell exclusion stain (Live/Dead Aqua) was purchased from Invitrogen (Carlsbad, CA). To detect NY-ESO-1c259TCR-expressing cells, purified anti-phycoerythrin-conjugated dextramer reagents specific for the HLA-A*02:01 SLLMWITQC complex (Immudex) were used at the manufacturer’s recommended concentrations.
+ Open protocol
+ Expand
2

Isolation and phenotypic analysis of murine lymphocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mononuclear cells were isolated from mice spleens by Ficoll-Hypaque density gradient centrifugation and the count and viability of the lymphocytes were determined using a Guava EasyCyte Flow Cytometer and Viacount Kit (both Merck, USA). For this, 2 × 106 cells/ml were placed in RPMI containing 10% FBS, 2 mM glutamine, 100 U/ml penicillin, and 100 μg/ml of streptomycin, and with/without 10 μg/ml of recombinant gB. After incubation for 20 h at 37°C, the cells were used for phenotypic analysis of lymphocytes. Then, the cells were washed three times with PBS and viability staining was performed with FVS780 dye (Becton Dickinson, USA) according to the manufacturer’s protocol. Subsequently, the cells were washed and placed in vials containing PBS supplemented with 2% FBS and 0.09% sodium azide (staining buffer). Cell surface marker staining was then performed on the combination with the following conjugated antibodies: CD3-FITC, CD4-PE, CD8-BV650, and CD69-BV421 (all from Becton Dickinson). After incubation in the dark for 30 min on ice, the cells were washed three times with staining buffer. Subsequently, at least 10.000 CD3+ events were analyzed by flow cytometric acquisition using the Guava EasyCyte 16ST Flow Cytometer (Merck). Data were analyzed using InCyte software (Merck).
+ Open protocol
+ Expand
3

Urine Immune Cell Composition Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The 33,494 probes mapped to known genes were used to estimate the immune and kidney cell composition of the samples (Fig. 1B). The immune response in silico (IRIS) repository of 1,622 genes, classified by their specific expression in multiple immune cell lineages (27 (link)) and previously described transcript sets of 637 genes for kidney-specific cell lineages (28 (link)), was used to estimate the immune and renal cell composition in urine, respectively. Urine samples from 10 random septic patients were analyzed via flow cytometry using an Life Science Research II flow cytometer (Becton Dickinson, Franklin, NJ). Approximately 50–200 mL of urine was collected and processed within 30 minutes of sample collection. The samples were stained with CD3-AF488 (Number 557694; Becton Dickinson), CD4-AF700 (Number 566318; Becton Dickinson), CD8-BV650 (Number 565289; Becton Dickinson), CD14-PE (Number 561707; Becton Dickinson), CD19-APC (Number 561742; Becton Dickinson), and Sytox Blue (Number S34857; Invitrogen; Thermo Fisher Scientific, Waltham, MA).
+ Open protocol
+ Expand
4

Multiparametric Flow Cytometry of tPCLS

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single‐cell suspensions of tPCLS were generated as described above. Single‐cell suspensions were blocked with FcR blocking reagent (Miltenyi Biotec) in 0.5% PBS‐BSA for 20 min, stained with fluorochrome‐conjugated antibodies, and analyzed on a FACSSymphony A5SE flow cytometer (BD Biosciences). Live single cells were identified by FSC and SSC characteristics. The data were analyzed using FlowJo V10 (TreeStar). All antibodies and secondary reagents were titrated to determine optimal concentrations. Comp‐Beads (BD) were used for single‐color compensation to create multicolor compensation matrices. For gating, fluorescence minus one control was used. The instrument calibration was controlled daily using Cytometer Setup and Tracking Beads (BD Biosciences). The following antibodies were used: CD3‐BUV805 (#612896, BD Biosciences), CD4‐BB630 (#562316, BD Biosciences), CD8‐BV650 (#743067, BD Biosciences), CD14‐PerCP‐Cy5.5 (#561116, BD Biosciences), CD15‐BUV805 (#742057, BD Biosciences), CD16‐BV650 (#563692, BD Biosciences), CD19‐APC‐H7 (#560252, BD Biosciences), CD25‐PE‐Cy7 (#557741, BD Biosciences), CD33‐BV510 (#563257, BD Biosciences), CD45‐AF700 (#368514, BD Biosciences), CD80‐BV711 (#740801, BD Biosciences), CD206‐PE/Cy7 (#321124, BioLegend), CD326‐FITC (#324203, BioLegend), HLA‐DR‐APC/Fire750 (#307658, BioLegend), MerTK‐BV421 (#367603, BioLegend).
+ Open protocol
+ Expand
5

Detailed Immunophenotyping of T-cell Subsets

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies were used for T-cell phenotyping: CD8-BV650 (BD), CD4-BV605 (BD Biosciences), CD3-Alexa Fluor700 (BD Biosciences), CD95-BV711 (BD Biosciences), CD45RO-PerCPCy5.5 (BD Biosciences), CD25-APC-Cy7 (BD Biosciences), CD127-BV421 (BioLegend), CCR7-PE-Cy7 (BioLegend), CD45RA-ECD (Beckman Coulter), PD-1-BV785 (BioLegend), LAG3-FITC (R&D Systems), and TIM3-APC (R&D Systems). The dead cell exclusion stain (Live/Dead Aqua) was purchased from Invitrogen. To detect transduced NY-ESO-1c259TCR-expressing cells, PE-conjugated pentamer reagents specific for the HLA-A*02:01 SLLMWITQC complex (ProImmune) were used at the manufacturer’s recommended concentrations.
+ Open protocol
+ Expand
6

Multicolor Flow Cytometry for Immune Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Multi-color flowcytometric analysis was performed on cells according to standard procedures using anti-human mAbs that cross-react with rhesus macaques. The following antibodies were used at predetermined optimal concentrations: CD45 (BD clone D058-1283), CD3 APC-Cy7 (BD clone SP34-2), CD4 BV605 (BD clone L200), CD8 BV650 (BD clone SK1), CD69 PE-CF594 (BD clone FN50), CD161 PE (Biolegend clone HP- 3G10), TCR γδ PE-Cy7 (BD clone B1), TCR Vδ1 FITC (ThermoScientific clone TS8.2), TCR Vδ2 FITC (ThermoScientific clone 15D), TCR Vα7.2 BV421 (Biolegend clone 3C10), and Aqua Live/Dead amine dye-AmCyan from Invitrogen (Waltham, MA). Surface staining was carried out by standard procedures as earlier described (23 (link)). Flow cytometric acquisition was performed on the BD Fortessa instrument driven by the FACS DiVa software for at least 100,000 CD3+ T cells in PBMC or at least 10,000 CD3+ T cells for rectal biopsy lymphocytes. The data acquired were analyzed using FlowJo software (version 10.7.1; TreeStar, Ashland, OR). For evaluation of cytokine production, intracellular cytokine staining with IFN-γ BV510 (Biolegend clone 4S.B3), IL-17 PerCP-Cy5.5 (eBioscience clone eBio64DEC17), IL-22 APC (Invitrogen clone IL22JOP), and TNF-α Alexa Fluor 700 (BD clone MAb11) were utilized.
+ Open protocol
+ Expand
7

Comprehensive Immune Profiling of Tumor Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
In order to obtain optimal results, a minimum of 40 million tumor cells were blocked with anti-CD16/32 antibody then magnetically labeled using CD4 T cell isolation kit (Miltenyi Biotec Inc., 130-104-454). A minimum of 5 million CD4 positive cells were stained with CD4-APC (eBioscience, 17-0041-81) and then fixed and permeabilized using the Foxp3 staining kit (Thermofisher, 00-5523-00) and stained intracellularly with Foxp3-FITC (eBioscience, 11-5773-80). CD4 negative cells were stimulated using PMA-Ionomycin and Golgi stop then stained for surface markers CD8-BV650 (BD bioscience, 563822), Gr-1-APC-Cy7 (BD bioscience, 557661), CD11b-APC (Biolegend, 101211), CD206-BV421 (Biolegend, 141717), F4/80-BUV395 (BD bioscience, 565614) and fixed then permeabilized using the Foxp3 staining kit and stained intracellularly for IFN-γ-PE.
+ Open protocol
+ Expand
8

Fluorescent Labeling of NiV Vaccine Antigens

Check if the same lab product or an alternative is used in the 5 most similar protocols
NiV G ECD and CD40.NiV were labeled with AF647 following instructions of the manufacturer (Thermo Fisher Scientific, cat# A20186). Splenocytes from naive hCD40Tg were incubated 30min on ice with 1nM of labeled vaccine and phenotyped using following antibodies: CD45-BV711 (Sony biotechnologies, clone 30-F11), CD11c-BV785 (Sony biotechnologies, clone N418), MHC-II (I-A/I-E)-PerCP-Cy5.5 (Sony biotechnologies M5/114.5.2), CD3-AF700 (Sony Biotechnology, clone 17A2), B220-PECy7 (Sony biotechnologies, clone RA3-6B2). Binding on AGM PBMCs was performed similarly using following phenotypic panel: Anti-CD3-V500 (BD Biosciences, clone SP34-2), CD4-FITC (BD Biosciences, clone L200), CD8-BV650(BD Biosciences, clone RPA-T8), CD20-SB702 (Fisher Scientific, clone 2H7), CD14-AF700 (Biolegend, clone M5E2), CD45-PerCP (Biolegend, clone D058-1283), CD163-APC (Biolegend, clone GHI/61) and HLA-DR-APC-H7 (BD Biosciences, clone L243).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!