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Gapdh d4c6r

Manufactured by Cell Signaling Technology
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GAPDH (D4C6R) is a primary antibody that recognizes the glyceraldehyde-3-phosphate dehydrogenase (GAPDH) protein, an enzyme involved in the glycolytic pathway. It is a highly specific and sensitive tool for the detection and quantification of GAPDH in various biological samples using techniques such as western blotting, immunohistochemistry, and immunocytochemistry.

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12 protocols using gapdh d4c6r

1

Inhibition of BACE1, Presenilin, and Proprotein Convertases

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Inhibitors of BACE1 (C3), presenilin (DAPT) and proprotein convertases (dec-RVKR-cmk) were purchased from Merck (Nottingham, UK). TMI1 was synthesized (Supplementary Methods). 6-diazo-5 oxo-l-Norleucine and GlcN were from Sigma Aldrich. All other inhibitors, IR antibodies C-19, C-4, H-78 and phosphospecific (Tyr1162/11636), PTEN (A2B1), HA-probe (Y-11) and O-GlcNac (CTD110.6) antibodies were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). IR antibodies 18-44 and 83-7 (biotin labeled) were from Thermo Fisher Scientific. Antibodies specific for Golgin 97 (CDF4), PKB (C67E7), pPKB (193H12), Erk1/2 (9102), pErk1/2 (9101), Presenilin-1 (D39D1), Nicastrin (D38F9), β-actin (13E5), and GAPDH (D4C6R) were from Cell Signaling Technology (Danvers, MA, USA). Anti-GFP (mixture of clones 7.1 and 13.1) was from Roche. Anti-BACE1 (B0681) and Anti-FlagM2 were from Sigma Aldrich.
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2

Western Blot Analysis of Membrane Proteins

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Cells were lysed with Cell Lysis Buffer (Cell Signaling Technology) supplemented with Protease/Phosphatase Inhibitor Cocktail (Cell Signaling Technology). For Western blot to confirm expression of membrane-localized CD4 fusion protein in Fig. 5B, cells were lysed in RIPA buffer made using recipe found here: https://www.abcam.com/protocols/general-western-blot-protocol#Solutions%20and%20reagents. Lysates were mixed with NuPAGE LDS Sample Buffer (Life Technologies) and NuPAGE Sample Reducing Agent (Life Technologies) and were run on Bolt 4–12% Bis-Tris Plus gels (Invitrogen). Gels were transferred with iBlot2 PVDF Mini Stacks (Invitrogen) and iBlot2 (Invitrogen). Blots were probed with antibodies for mCherry (GTX128508, GeneTex), GFP (sc-99G, Santa Cruz Biotechnology), Tid1 (EPR12414, abcam or RS-11, Santa Cruz Biotechnology), p53 (DO-1, Santa Cruz Biotechnology), CHOP (9C8, Novus Biologicals), ATF6-N (70B1413.1, Novus Biologicals), pEIF2a (9721, Cell Signaling Technology), EIF2a (9722, Cell Signaling Technology), Bax (6A7, Santa Cruz Biotechnology), MDM2 (sc-965, Santa Cruz Biotechnology), Cyclophillin D (E11AE12BD4, abcam), Hsp90 (C45G5, Cell Signaling Technology), Cox IV (3E11, Cell Signaling Technology), and GAPDH (D4C6R, Cell Signaling Technology). Blots were imaged using Bio-Rad ChemiDoc MP Imaging System or Azure Biosystems Sapphire Biomolecular Imager.
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3

Western Blot Analysis of Receptor Tyrosine Kinases

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Cells were lysed in lysis buffer (50mM Tris pH 7.5, 150mM NaCl, 1mM EDTA, 1mM Na3VO4, 1mM NaF, 1% Triton X-100), or RIPA buffer (50mM Tris pH 7.5, 150mM NaCl, 1mM EDTA, 1mM Na3VO4, 1mM NaF, 0.1% SDS, 0.1% deochycholate, 1% IGEPAL CA-630) with protease inhibitor cocktail (Roche). Lysates were run on 8 or 10% SDS-PAGE and transferred to PVDF membrane (EMD Millipore). Proteins were detected using: anti-MET (D1C2 XP– Cell Signaling), anti-phospho-MET Tyr1234/Y1235 (Cell Signaling), anti-HER3 (SC-285 – Santa Cruz), anti-HER3 (SC-81455 – Santa Cruz), anti-HER3 (D22C5 XP – Cell Signaling), anti-phospho-HER3 Tyr1289 (21D3 – Cell Signaling), anti-HER2 (SC-284 – Santa Cruz), anti-phospho-HER2 Tyr1221/1222 (Cell Signaling), anti-FLAG M2 (Sigma-Aldrich), anti-EGFR ((1005) SC-03 – Santa Cruz), anti-phospho-EGF-Receptor Tyr1068 (Cell Signaling), β-tubulin (9F3 – Cell Signaling), GAPDH (D4C6R - Cell Signaling). Secondary antibodies were anti-rabbit-IgG HRP-linked antibody (Cell Signaling), or anti-mouse IgG HRP-linked whole antibody (GE Healthcare Biosciences). Blots were developed using ECL/ECL Prime (Thermo Fisher Scientific).
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4

Immunoblotting of APOBEC3A and APOBEC3B

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Identical amounts of cell lysate (5–20ug) was mixed with 2× loading Laemmli buffer (Biorad) supplemented with DTT (Sigma) and incubated for 10 min at 95°C. Proteins were separated in 4–20% Tris-glycine polyacrylamide gels (Mini-PROTEAN; Bio-Rad) and electrophoretically transferred onto polyvinylidene fluoride membranes. Membranes were blocked with 3% BSA in PBS and incubated with primary antibodies against APOBEC3A (PA5-78800 from Thermo Fisher) and/or APOBEC3B (E9A2G, Cell Signaling), as well as GAPDH (D4C6R, Cell Signaling). Secondary antibodies were goat anti-mouse IgG (H + L) DyLight 550 or goat anti-rabbit IgG (H + L) DyLight 650 (Thermo Fisher). After sequential washes in TBST buffer, fluorescent bands were visualized using a ChemiDoc Bio-Rad imager.
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5

Western Blot Analysis of Receptor Tyrosine Kinases

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Cells were lysed in lysis buffer (50mM Tris pH 7.5, 150mM NaCl, 1mM EDTA, 1mM Na3VO4, 1mM NaF, 1% Triton X-100), or RIPA buffer (50mM Tris pH 7.5, 150mM NaCl, 1mM EDTA, 1mM Na3VO4, 1mM NaF, 0.1% SDS, 0.1% deochycholate, 1% IGEPAL CA-630) with protease inhibitor cocktail (Roche). Lysates were run on 8 or 10% SDS-PAGE and transferred to PVDF membrane (EMD Millipore). Proteins were detected using: anti-MET (D1C2 XP– Cell Signaling), anti-phospho-MET Tyr1234/Y1235 (Cell Signaling), anti-HER3 (SC-285 – Santa Cruz), anti-HER3 (SC-81455 – Santa Cruz), anti-HER3 (D22C5 XP – Cell Signaling), anti-phospho-HER3 Tyr1289 (21D3 – Cell Signaling), anti-HER2 (SC-284 – Santa Cruz), anti-phospho-HER2 Tyr1221/1222 (Cell Signaling), anti-FLAG M2 (Sigma-Aldrich), anti-EGFR ((1005) SC-03 – Santa Cruz), anti-phospho-EGF-Receptor Tyr1068 (Cell Signaling), β-tubulin (9F3 – Cell Signaling), GAPDH (D4C6R - Cell Signaling). Secondary antibodies were anti-rabbit-IgG HRP-linked antibody (Cell Signaling), or anti-mouse IgG HRP-linked whole antibody (GE Healthcare Biosciences). Blots were developed using ECL/ECL Prime (Thermo Fisher Scientific).
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6

Western Blot Analysis of Caspase Activation

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Cellular protein in the transfected cells was extracted by RIPA lysis buffer (Beyotime, Shanghai, P.R. China). Protein samples were separated on a 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene fluoride membranes. The membranes were then blocked with 5% skim milk for 1 h at room temperature and were incubated with the special primary antibodies: caspase 8 (1C12), cleaved caspase 8 p18 (Asp387), or GAPDH (D4C6R) (all at a dilution of 1:1,000; Cell Signaling Technology, Beverly, MA, USA) at 4°C overnight. The membranes were then incubated with horseradish peroxidase-conjugated secondary antibody for 1 h at room temperature. Protein bands were developed using enhanced chemiluminescence and analyzed by ImageJ 1.49 (National Institutes of Health, Bethesda, MD, USA)19 (link).
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7

Western Blot Analysis of Epithelial-Mesenchymal Transition Markers

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Cells were lysed using radioimmunoprecipitation assay (RIPA) buffer supplemented with protease inhibitors for 20 min. Proteins (20 μg) extracted from cells were separated on SDS-PAGE gel and transferred to a nitrocellulose membrane. The membrane was blocked for 1 h with blocking buffer (5% non-fat milk in PBS containing 0.1% Tween 20) and then incubated with primary antibodies dissolved in blocking buffer at 4 ℃ overnight. Membranes were washed with TBS-T buffer (PBS with 0.1% Tween 20) for 5 min three times and incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies at RT for 1 h. The membrane was developed using an ECL Kit (Amersham Pharmacia Biotech, Little Chalfont, Buckinghamshire, UK) with X-ray film.
The primary antibodies used in this western blotting were as follows: E-cadherin (H-108, 1:1000, sc-7870; Santa Cruz Biotechnology, Inc.), N-cadherin (H-63, 1:1000, sc-7939; Santa Cruz Biotechnology, Inc.), fibronectin (EP5, 1:1000, sc-8422; Santa Cruz Biotechnology, Inc.), vimentin (V9, 1:1000, sc-6260; Santa Cruz Biotechnology, Inc.), slug (1:1000, GTX31749; GeneTex), snail (1:10000, GTX125918; GeneTex), and GAPDH (D4C6R, 1:1000, 97,166; Cell Signaling Technology).
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8

Protein Isolation and Nuclear Translocation Analysis

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Whole protein was isolated by using whole-cell lysis buffer in the presence of a protein phosphatase inhibitor cocktail (Pierce, USA). For detecting the YAP nuclear translocation, Nuclear-cytoplasmic fractionation was conducted using the NE-PER Nuclear and Cytoplasmic Extraction Reagents kit (Thermo Fisher Scientific, USA) according to the manufacturer's protocol, which enable stepwise separation and preparation of cytoplasmic and nuclear extracts from Schwann cell lineage. After the samples were electrophoresed through 8-12% polyacrylamide gels, proteins were transferred onto a PVDF membranes. The membranes were incubated with primary antibodies. Antibodies include (Cell Signaling Technology, USA, unless otherwise indicated): NF1 (D7R7D) (1:1,000, #14623) YAP (D8H1X) (1:1,000, #14074), p-YAP (S127) (D9W2I) (1:500, #13008S), β-Actin (13E5) (1:1,000, #4970), Cleaved Caspase-3 (Asp175) (1:1,000, #9664), GAPDH (D4C6R) (1:1,000, #97166) and Histone H3 (1:1,000, affinity # BF9211). After incubated with peroxidase-linked secondary antibodies (GK500705, Gene Tech, China), the membranes were washed and visualized using Immobilon Western HRP Chemiluminescence Substrate (Millipore, USA).
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9

Immunoblotting of MCT1 Protein Expression

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Cells were lysed with RIPA buffer (50 mM Tris [pH 7.4], 150 mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS) supplemented with protease inhibitors (Sigma Aldrich, Cat. P2714), PMSF (Sigma Aldrich), and 2-mercaptoethanol at 20%. For each sample, twenty micrograms of protein were resolved by PAGE and evaluated by immunoblotting. The antibodies against MCT1 were purchased from Abcam (ab85021, used in Figure 5d) and Invitrogen (MA5–18288, used to confirm staining pattern observed with ab85021) and used at 1:1,000. GAPDH (D4C6R) was from Cell Signaling Technology (Danvers, MA 01923) and used at 1:1,000. IRDye 680 or 800 goat anti-rabbit secondary antibodies were used (LI-COR Biosciences) and immunoblots imaged on an Odyssey FC (LI-COR Biosciences).
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10

Protein Extraction and Western Blot Analysis

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We harvested and lysed cells with 5 × loading buffer (Beyotime, Beijing, China) after culture for 48 h. We fully lysed the cell lysates with a vortex mixer (Thermo Fisher, Waltham, MA, United States) at 3000 rpm. The protein samples were then incubated in a dry bath incubator (Thermo Fisher, Waltham, MA, United States) at 100°C for 10 min to denature the proteins. We subjected protein samples to SDS–PAGE for gel electrophoresis, transferred the gel to PVDF membranes (Millipore, Boston, MA, United States) for transfer electrophoresis, and then exposed them by ECL (Thermo Fisher, Waltham, MA, United States). We purchased primary antibodies against VDR (D2K6W) and GAPDH (D4C6R) from Cell Signaling Technology (CST, Boston, MA, United States). We obtained HRP-conjugated antibody (ZB-2301, ZB-2305) from ZSGB-Bio Company (Beijing, China). All experiments were repeated at least three times.
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