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17 protocols using protease inhibitor phenylmethanesulfonyl fluoride

1

Protein Extraction and Western Blot Analysis

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Tissue and cellular protein were lysed by radio-immune precipitation assay buffer (Beyotime, China) with phenylmethane sulfonyl fluoride protease inhibitor (Beyotime, China), and the homogenate was centrifuged at 10,000 × g for 5 min at 4°C. The supernatant was collected and the protein concentration was determined immediately using a bicinchoninic acid assay protein quantification kit (Beyotime, China). The proteins were separated in 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis, transferred onto a polyvinylidene difluoride, and then probed with antibodies following standard procedures. The antibodies and their dilutions were utilized for western blot as follows: rabbit anti-Twinkle (bs-11775R; Bioss, China; 1:1,000), mouse anti-β-actin (3700S; CST, United States; 1:1,000), goat anti-rabbit IgG-HRP (YJ0189; Ylesa, China; 1:2,500), and goat anti-mouse IgG-HRP (YJ0188; Ylesa, China; 1:2,500).
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2

Western Blotting for Protein Analysis

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Western blotting was performed as described previously (10 (link)). Briefly, to obtain total protein, cells or tissues were lysed with RIPA lysis buffer (Beyotime, Shanghai, China) containing phenylmethanesulfonyl fluoride protease inhibitor (Beyotime). Protein concentration was measured using a detergent compatible Bradford protein assay kit (Beyotime). In total, 20 μg protein was loaded onto a 10% denaturing SDS-PAGE gel, and protein bands were then transferred to a 0.2-μm PVDF membrane (Merck Millipore, Germany). The membrane was blocked in 3% bovine serum albumin for 1 h, and FADS2 rabbit polyclonal antibody (Abcam, ab232898, 1:1000 dilution), E-cadherin rabbit polyclonal antibody (Proteintech, 20874-1-AP, 1:5000 dilution), N-cadherin rabbit polyclonal antibody (Proteintech, 66219-1-Ig, 1:5000 dilution), Snail rabbit polyclonal antibody (Proteintech, 13099-1-AP, 1:500 dilution), GAPDH rabbit polyclonal antibody (Proteintech, 10494-1-AP, 1:20000 dilution), or β-Actin rabbit polyclonal antibody (Abcam, ab8227, 1:5000 dilution) was added, followed by incubation at 4°C. After overnight incubation, the membrane was incubated with rabbit (Epizyme, LF102, 1:5,000 dilution) secondary antibody. Finally, the proteins bands were detected using the ECL system (Beyotime Biotechnology, China). This experiment was performed at least three times.
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3

Immunoblotting Analysis of A549 Cells

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A549 cells were washed twice with PBS and lysed with 100 μL of immunoprecipitation buffer (Beyotime, Shanghai, China) containing 1% phenylmethanesulfonyl fluoride protease inhibitor (Beyotime). The proteins were extracted and resolved using 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Rabbit anti-FLAG (Abcam, Cambridge, UK), mouse anti-mCherry (Abcam) and mouse anti-β-actin (Beyotime) were used for immunoblotting analysis. β-actin-1 was used as the reference. Horseradish peroxidase-conjugated goat anti-rabbit and goat anti-mouse immunoglobulin G (Beyotime) were used as secondary antibodies.
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4

Western Blot Analysis of Caskin1 and PHEV

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The cells in 6-well plates or brain tissues were washed once with phosphate buffer saline (PBS), followed by lysis using a Radio Immunoprecipitation Assay (RIPA) Lysis Buffer and a Phenylmethanesulfonyl fluoride protease inhibitor (Beyotime) on ice for 30 min. The concentration of protein was determined by the BCA Protein Assay kit (Pierce). The protein samples (50 mg/lane) were separated using a 10% polyacrylamide gels and were transferred to 0.22 μm polyvinylidene fluoride membranes using the Bio-Rad wet transfer system. After blocking overnight at 4°C with 5% non-fat dry milk in PBS, the membranes were probed with antibodies against Caskin1 (Synaptic Systems, Göttingen, 1:2000), β-actin (Proteintech, USA, 1:2000) and PHEV (a laboratory-prepared polyclonal antibody to PHEV, 1:500) with an overnight incubation at 4°C. Next, the membranes were washed with PBS containing tween-20 (PBST) four times and were incubated with horseradish peroxidase-linked secondary anti-rabbit or anti-mouse IgG antibodies (Proteintech) for 1 h at 37°C. After washing with PBST, the signal was visualized using an ECL detection kit (Proteintech). β-actin was used as a loading control.
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5

MAVS Protein Expression and IL-8 Secretion

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The SUVECs were harvested and incubated in radioimmunoprecipitation (RIPA) cell lysis buffer with protease inhibitor phenylmethanesulfonyl fluoride (Beyotime, China) to a final concentration of 1 mM for 30 min on ice. The protein concentration was determined with BCA Protein Assay Kit (Beyotime, China). Protein samples were separated by 12% SDS-PAGE, and then transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore, USA). After blocking with 5% skim milk at room temperature for 2 h, the membranes were incubated with an anti-β-actin mouse monoclonal antibody (Tianjin Sungene Biotech, China) or an anti-MAVS mouse polyclonal antibody at 4°C overnight. Anti-MAVS mouse polyclonal antibody (antigen peptide: residues 150–240 of pig MAVS) was conserved in our laboratory. After five washes with TBST, the membranes were incubated with horseradish peroxidase (HRP)-conjugated goat anti-mouse IgG (1:5,000) secondary antibody (Jackon, USA) for 2 h at room temperature. After another five washes, the signal was detected using an enhanced chemiluminescence (ECL) Western blot analysis system. Secreted IL-8, obtained from cell culture supernatants, was determined using swine ELISA kits (Invitrogen, USA) according to the manufacturer's protocol.
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6

Western Blot Analysis of PAX2, CDK1 and GAPDH

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The cells were lysed with RIPA buffer (Beyotime, shanghai, China) and 1 mM protease inhibitor phenylmethanesulfonyl fluoride (Beyotime, shanghai, China), agitated for 15 minutes at 4℃, and centrifuged at 12,000 rpm for 25 minutes. Protein concentrations were measured with the BCA Protein Assay (Beyotime, Shanghai, China). Proteins were electrophoresed on SDS-polyacrylamide gels and transferred onto a polyvinylidene fluoride for analysis. Then, the membrane was incubated with rabbit anti-PAX2 (1:200 dilutions; Invitrogen, Carlsbad, CA), anti-CDK1(1:2000 dilutions; Abcam, San Francisco, USA) and anti-GAPDH antibody(1:5000 dilution; Abcam, San Francisco, USA) overnight at 4℃, respectively, and then incubated in the goat anti-rabbit IgG conjugated with horseradish peroxidase (1:5000 dilution; MT-bio, shanghai, China) at room temperature for 1 hour. Antibody binding was visualized using ECL chemiluminescence reagent (Thermo, MA, USA). GAPDH was used as an internal control to normalize other proteins expression level.
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7

Western Blot Analysis of EMT Markers

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Treated cells were lysed in RIPA buffer containing protease inhibitor phenylmethanesulfonyl fluoride (Beyotime, Nanjing, China). The BCA Protein Assay kit (Beyotime, Nanjing, China) was used to determine protein concentrations. Equal amounts of extracts (50 μg of protein) were fractionated on each lane of a polyacrylamide-sodium dodecyl sulfate (SDS) gels and transferred to polyvinylidenefluoride (PVDF) membrane (Millipore, Billerica, MA). Then membranes were blocked with 5% skimmed milk for 2 h and incubated with antibodies against E-cadherin (1:1000), N-cadherin (1:1000), Vimentin (1:1000), Snail (1:1000), Twist (1:1000), GAPDH (1:1000) and FLAG (1:1000) at 4°C overnight. Subsequently, the membranes were incubated with secondary antibodies for 1 h at room temperature. The target proteins were visualized by adding ECL luminous agent using the image-forming system of Amersham Imager 600. GAPDH antibody was used as the internal standard.
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8

Quantification of Cell Cycle Regulators

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GAPDH and CDC25A rabbit anti-human antibodies were purchased from Cell Signaling Technology. CCNB1 rabbit anti-human antibodies were bought from Abcam. Anti-rabbit antibodies for GAPDH, CDC25A, and CCNB1 and secondary antibodies of IRDye 800 raised in goat were purchased from Li-Cor Biosciences (Lincoln, NE, USA). The proteins were extracted from cells using Western blot and IP kits (Beyotime, Beijing, China) and protease inhibitor phenylmethanesulfonyl fluoride (Beyotime, Beijing, China). Protein concentration was detected by enhanced BCA protein assay kit (Beyotime, Beijing, China). The Western blot procedure was performed as described in our previous publication.14 (link) The membranes of the protein blots were scanned by Odyssey Software Version 3.0 system (Li-Cor Biosciences Lincoln, NE, USA). GAPDH protein was used as an internal reference to calculate the expression of each protein.
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9

Western Blot Protein Quantification

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Cells were washed three times on ice-cold phosphate buffered saline and lysed by incubation in RIPA Lysis buffer containing protease inhibitor phenylmethanesulfonyl fluoride (Beyotime, Nantong, China). After grinding, supernatants were collected by centrifugation (5000 × g for 10 min at 4 °C). Protein concentration was determined by bicinchoninic acid assay (BCA kit, Beyotime, Nantong, China). Extracts with equal amounts of protein were solubilized in SDS sample buffer, separated by SDS–PAGE, transferred to polyvinylidene difluoride membranes (Millipore), blocked with 5% nonfat milk diluted in Tris-buffered saline with Tween‐20 (TBST) for 2 h at room temperature, and hybridized with primary antibody at 4 ℃ overnight. Before and after incubation with the secondary antibodies for 2 h at room temperature, the membranes were washed three times for 15 min with TBST. Secondary antibody was HRP‐linked anti‐rabbit IgG (CST; 1:10 000). Signals were detected by an ECL Western Blot Analysis System (Tanon, Shanghai, China). Bands were quantified with ImageJ 1.8 software (NIH, Bethesda, MD, USA).
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10

Western Blot Analysis of Protein Expression

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Cells were lysed with lysis buffer (Beyotime Institute of Biotechnology, Haimen, China) containing protease inhibitor phenylmethane sulfonyl fluoride (Beyotime Institute Biotechnology), and the supernatant of the lysed cells was recovered. Protein concentrations were quantified using a bicinchoninic acid protein assay. Protein samples (50 µg per lane) were separated by 10% SDS-PAGE and transferred onto polyvinylidene difluoride membranes. Non-specific binding was blocked with 5% skim milk in TBS containing 0.1% Tween-20 for 1 h at room temperature. Subsequently, blotted membranes were incubated overnight at 4°C with specific primary antibodies. The following primary antibodies were used: Monoclonal rabbit anti-human podoplanin antibody (1:1,000; cat. no. 9047; Cell Signaling Technology, Inc., Danvers, MA, USA); monoclonal mouse anti-human FGF1 antibody (1:500; cat. no. H00002246-M02; Abnova Corporation, Taipei, Taiwan); and monoclonal mouse anti-human α-tubulin antibody (1:5,000; cat. no. 66031-1-Ig; ProteinTech Group, Inc., Chicago, IL, USA) as a loading control. Detection was performed using horseradish peroxidase-conjugated secondary antibodies (1:5,000; cat. nos. SA00001-1 and SA00001-2; ProteinTech Group, Inc.). Finally, blots were immersed in ECL detection reagent (EMD Millipore, Billerica, MA, USA) and exposed to a ChemiDoc™ XRS+ system (Bio-Rad Laboratories, Inc.).
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