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8 protocols using 1260 infinity instrument

1

Pyocyanin Production Quantification in P. aeruginosa

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Cells from fresh overnight cultures of P. aeruginosa PA1201 and its derivative strains were inoculated into 50 mL of PPM in a 250 mL Erlenmeyer flask at a final concentration equivalent to an optical density at 600 nm (OD600) of 0.025, followed by incubation at 28 °C with shaking at 200 rpm. PCA was extracted with chloroform (pH 4.0) and quantified with high performance liquid chromatography (HPLC), as previously described [25 (link),29 (link)]. HPLC with a UV–Vis detector was used for qualitative and quantitative analysis of PCA in the reverse phase on an Agilent Technologies 1260 Infinity instrument. A 2 μL sample was injected and separation was achieved on a reverse phase C 18 column (XDB-C18,5 μm 4.6 × 12.5 mm2 Agilent Eclipse) using 5 mM ammonium acetate–acetonitrile (40:60, v/v) at a flow rate of 0.7 mL/min. The column temperature was maintained at 30 °C in the column oven.
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2

Analytical Techniques for Chemical Characterization

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The NMR spectra were recorded on a Bruker 400 MHz spectrometer using TMS as an internal standard. The high resolution electrospray ionization mass spectroscopy (HRESIMS) spectra were measured on a Waters Xevo G2 Q-TOF (Waters) mass spectrometer. Optical rotations were measured with an Anton Paar MCP100 polarimeter. Electronic circular dichroism (ECD) spectra were measured on a JASCO J-715 spectropolarimeter. TLC and column chromatography (CC) were performed on plates precoated with silica gel GF254 (10–40 μm) or over silica gel (200–300 mesh, Qingdao Marine Chemical Factory). Chromatography was performed using Sephadex LH-20 (18–110 μm, Amersham Pharmacia Biotech AB), and octadecylsilane (ODS) silica gel (50 μm, Daiso). The preparative and semipreparative HPLC were performed on an Agilent Technologies 1,260 infinity instrument equipped with the DAD detector. Anti-β-actin (Cat. 4970S), anti-p-H3 (Cat. 3,377), and anti-Cyclin B1 (Cat. 12231S) antibodies were all purchased from Cell Signaling Technology (Boston, MA, United States).
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3

Spectroscopic Analysis of Natural Compounds

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Optical rotations were recorded on an MCP 500 automatic polarimeter (Anton Paar Trading Co. Ltd., Shanghai, China) under 20 °C. Ultraviolet spectra were detected by a UV8000 UV/Vis spectrophotometer (Shanghai Metash instrument Co., Ltd., Shanghai, China). The HRESIMS spectra were measured by a Xevo G2 Q-TOF mass spectrometer (Waters Corporation, Milford, MA, USA). The NMR spectra were recorded on a 400 MHz spectrometer (Bruker, Fällanden, Switzerland) using TMS as the internal standard. Reversed-phase HPLC was performed on a 1260 infinity instrument (Agilent Technologies, San Diego, CA, USA) equipped with the DAD detector. Purifications by column chromatography (CC) were performed on silica gel, Sephadex LH-20, and ODS. The TLC plates were visualized under UV light or by spraying with 10% H2SO4.
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4

Characterization of Synthetic Compound JMC31

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The synthetic procedures and analysis were reproduced from the previously reported synthesis of JMC31 [21 (link)]. Electrospray ionization mass spectrometry (ESI-MS) was performed by an Agilent 1100 series liquid chromatograph system with an API-ES interface. Mass spectra were acquired in positive mode scanning over the mass range m/z of 150–1500. 1H NMR and 13C NMR spectra were recorded on a Bruker Advance DPX400 operating at 400 MHz, using the residual signal of the deuterated solvent as the internal standard. The value of chemical shifts (δ) is given in ppm and coupling constants (J) are given in hertz (Hz). Splitting patterns are described as singlet (s), doublet (d), triplet (t), quartet (q), doublet of doublet (dd), and multiplet (m). The chemical purity of the final compound was determined using an Agilent 1260 Infinity instrument comprising a binary pump, an autosampler, a UV-DAD, and an ESI-MS detector. The chromatographic separation was performed with an Agilent Poroshell 120 EC-C18 column (4.6 mm × 100 mm, 2.7 μm), injecting 5 μL of the sample. Analyses were carried out with gradient elution, solvent A (0.1% formic acid in water), and solvent B (0.1% formic acid in acetonitrile), 90:10 to 10:90 over 6 min, at the flow rate of 2 mL/min, and a UV detector at 254 nm. The compound purity was ≥95.0%.
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5

High-Performance Size-Exclusion Chromatography

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For HP-SEC, samples were analyzed with a TSKgel G3000SWxL column (7.8 × 300 mm, 5 μm). Chromatograms were recorded with a 1260 MWD VL UV detector, an Agilent 1260 Infinity instrument, and a 1260 ALS autosampler operating at a flow rate of 0.8 mL/min. The mobile phase consisted of 100 mM sodium phosphate dibasic buffer, 150 mM sodium chloride, and 0.05% (w/v) SDS at a pH of 7.0, and was filtered through a 0.2 μm filter prior to use.
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6

Phenol and 4-Chlorophenol Quantification by HPLC and LC-MS

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Cell biomass was measured in terms of optical density at 600 nm (OD600). The residual phenol and 4-chlorophenol contents were determined using high-performance liquid chromatography (HPLC) performed with an Agilent 1260 infinity instrument equipped with a reverse-phase poroshell 120 EC-C18 column (4.6 × 150 mm, 2.7 μm, Agilent). The mobile phase was a mixture of methanol and MillQ water (60:40 [vol/vol]) at a flow rate of 0.8 mL/min. The injection volumes for all samples were 5 µl and monitored at 210 nm with a variable-wavelength detector. LC-MS analysis was performed with a SHIMADZU LCMS-2020 instrument. Mass spectrometry was performed in ESI positive- and negative-ion modes with a scan range 50–500 m/z. The ESI-MS interface parameters were set as follows: drying gas (nitrogen) flow rate, 1.5 L/min; capillary column temperature, 350℃; spray voltage, 4.5 kV.
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7

Quantifying cAMP in Salt-Stressed Bacteria

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DSM6263 and CP-8 was initially cultured in M65 medium without NaCl for 12 h, Subsequently, 8% NaCl was introduced into the medium, and the cultures were further incubated for an additional 6 h. After centrifugation and bacterial pellet collection, rapid freezing was achieved using liquid nitrogen. The bacteria were then disrupted utilizing the liquid nitrogen grinding approach. A solution of 10% methanol was subsequently employed to resuspend the cell homogenate. cAMP was assayed using high-performance liquid chromatography (HPLC) performed with an Agilent 1260 infinity instrument equipped with a reverse-phase poroshell 120 EC-C18 column (4.6 × 150 mm, 2.7 μm, Agilent). The mobile phase was a mixture of methanol and 100mM KH2PO4 (10:90 [vol/vol]) at a flow rate of 1 mL/min. The injection volumes for all samples were 5 µl, respectively and monitored at 254 nm with a variable-wavelength detector.
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8

SEC-MALS Analysis of SARS-CoV-2 Proteins

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30 μL of either OptSpike1, Optspike2, or Nucleocapsid was run over a Yarra™ 3 μm SEC-4000 LC Column using an Agilent Technologies 1260 Infinity instrument, equipped with auto injector. 10 μl samples were injected onto the column in 50 mM Tris, 150 mM NaCl, 100 mM ArgCl, 10% glycerol, pH 8.0 at a flow rate of 0.25ml/min. MALS analysis was performed using miniDAWN Treos MALS detector (Wyatt) and Optilab T-rEX and analyzed using the associated Astra software. Baselines were determined automatically; peaks were manually delineated.
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