The largest database of trusted experimental protocols

5 protocols using nbt and bcip

1

In Situ Detection of miR-205 in Cervical Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
The sections (4 μm) of cervical cancer tissues and adjacent normal cervical tissues were treated with proteinase K (20 mg/mL) for 15 min and refixed in 4% PFA for 15 min. After acetylation with 0.25% acetic anhydride in 0.1 M triethanolamine (pH 8.0) for 10 min, sections were prehybridised with hybridisation buffer (Roche, Mannheim, Germany) at 40 °C for 2 h and then hybridised with a DIG-labelled LNA-miR-205 probe (5′-CAG(+A)C(+T)CCGG(+T)GGAA(+T)GA(+A)GGA-DIG-3′) at 40°Covernight. The sections were then incubated in buffer containing anti-DIG-antibody (Roche) 2 h at 37 °C, followed by staining with NBT and BCIP (Promega, Madison, WI, USA). Samples were viewed under a Nikon TE 2000-U microscope (Nikon, Tokyo, Japan).
+ Open protocol
+ Expand
2

Western Blot Analysis of Yeast Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total yeast protein extracts were prepared and analyzed by western blotting according to standard procedures (45). Commercial (anti-GFP, Roche; anti-Myc, Sigma-Aldrich; anti-Nop2, Thermo Fisher Scientific) and specific primary antibodies against r-proteins and AFs were used. Secondary goat anti-mouse or anti-rabbit horseradish peroxidase-conjugated antibodies (Bio-Rad), or alkaline-phosphatase-conjugated anti-mouse or anti-rabbit secondary antibodies (Promega) were used. Proteins were detected using a chemiluminescence detection kit (Super-signal West Pico, Pierce) and a ChemiDoc MP™ system (Bio-Rad). Alternatively, colorimetric detection was performed using NBT and BCIP (Promega).
+ Open protocol
+ Expand
3

Quantitative Analysis of Histone Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tachyzoites were collected, filtered and counted. Recombinant histones were quantified by absorbance at 280 nm assay (Perkin Elmer Lamba 25 UV/VIS spectrometer). In all cases, 1×107 parasites, or 1.5 µg of recombinant protein were loaded per well and resolved by 15% SDS-PAGE. Proteins were transferred to PVDF membrane for 1h at 100V. Western blot was then performed as described [21 (link)]. The primary antibodies: αrH2BZ [14 (link)], was used at 1/5000 for 1 h at room temperature, whereas α-rH2Ba was used at 1/100. Appropriate secondary antibodies were used: phosphatase alkaline-conjugated goat anti-mouse or anti-rabbit (Sigma) along with the NBT and BCIP (Promega) detection system, or horseradish peroxidase-conjugated goat anti-mouse or anti-rabbit employed along with the ECL detection system (Amersham-GE).
+ Open protocol
+ Expand
4

Western Blot Analysis of Toxoplasma Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tachyzoites were collected, filtered, counted and lysed by 6 cycles of rapid freezing/defreeze in hypotonic buffer, and boiled with LB for 5 minutes. 0.5 to 1×107 parasites were loaded per well and resolved by 15% SDS-PAGE. Proteins were transferred to PVDF membrane for 1h at 100V. Western blot was then performed as described [90 (link)]. The primary antibodies: αrH2B.Z [22 (link)], αrH2A.Z [23 (link)], αrROP5 (rabbit) and αrROP18 (rabbit) were used at 1/5000, whereas α-c-Myc (rabbit, abCam ab9106) was used at 1/2000 and αrSag1 [87 (link)] 1/200 for 1 h at room temperature. αH3ac (rabbit, Millipore, 06–599B) 1/200, was incubated overnight. Appropriate secondary antibodies were used: phosphatase alkaline-conjugated goat anti-mouse or anti-rabbit (Sigma) along with the NBT and BCIP (Promega) detection system.
+ Open protocol
+ Expand
5

Quantifying Salinity-Induced TIR1 Protein Levels

Check if the same lab product or an alternative is used in the 5 most similar protocols
Seven dpg tir1-1 35S:TIR1-Myc plants were transferred to liquid ATS medium supplemented with 200 mM NaCl for different times. After treatments, plants were homogenized in ice-cold buffer [50 mM 2-amino-2-(hydroxymethyl)-1,3-propanediol (TRIS) pH 7.5, 200 mM NaCl, 10% (v/v) glycerol, 0.1% (v/v) Tween-20], containing 1 mM phenylmethylsulfonyl fluoride (PMSF) and complete protease inhibitor cocktail (Roche) and centrifuged twice at 10,000 g at 4°C for 15 min. Equal amounts of protein were loaded onto SDS-PAGE and blotted onto the nitrocellulose membrane. Membranes were incubated with anti-c Myc antibody (Sigma) and goat anti-mouse alkaline phosphatase conjugate (Sigma) was used as secondary antibody. Then, Myc detection was visualized with NBT and BCIP (Promega). Densitometry analysis of immunoblots was performed using Matrox Inspector 2.2 software (Matrox Electronics Systems, Ltd).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!