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4 protocols using sc 33958

1

Molecular Mechanisms of Neuroinflammation

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Primary antibodies against NLRP1 (ab3683), cysteinyl aspartate-specific proteinase-1 (caspase-1) (ab1872), Beclin-1 (ab62557), microtubule-associated proteins light chain 3 (LC3) (ab48394) and BDNF (ab108319) were purchased from Abcam (San Francisco, CA, USA). autophagy-related protein 5 (Atg5) (#12994), autophagy-related protein 7 (Atg7) (#2631), prostacyclin (p62) (#5114), Interleukin-6 (IL-6) (#12912), Interleukin-1β (IL-1β) (#12703), tumor necrosis factor-α (TNF-α) (#3707), cleaved caspase-3 (#9664), p-PI3K (#4228), PI3K (#4249), p-AKT (#4060), AKT (#9272), p-mTOR (#2971), mTOR (#2983), p-TrkB (#4619), TrkB (#4603), Bcl-2 (#3498) and Bax (#2772) were purchased from Cell Signaling Technology (CST, Beverly, MA, USA), while an antibody against apoptosis-associated speck-like protein containing a caspase-activating recruitment domain (ASC) (sc-33958) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Horseradish peroxidase-conjugated secondary antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Other general agents were commercially available.
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2

Immune Cell Characterization in Mouse Peritoneal Exudates

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Antibodies against NLRP3 (Adipogen, Cryo2) (Sigma, HPA012878), IL-1β (R&D systems, AF-401-NA), caspase-1 (Santa Cruz, SC-154), MAP1 (Sigma, HM-1), NEK7 (Abcam, ab133514), MAP4 (BD, 611026), α-tubulin (MBL, PM054), acetylated tubulin (Santa Cruz, SC-23950), γ-tubulin (Sigma, T5326), Tom20 (Santa Cruz, FL-145, SC-11451), ERK2 (Santa Cruz, C-14), HA tag (Santa Cruz, y-11), Flag tag (Sigma, F1804) were used for western blots. Antibodies against MARK4 (Cell Signaling, 4834) (Abcam, ab124267) (house-made by MRC-PPU, the University of Dundee, UK), NLRP3 (Sigma, HPA012878; Abcam, ab4207), ASC (Enzo, ADI-905-173) (Santa Cruz, SC-33958) were used for in situ proximity-ligation assay. Antibodies against markers CD11b (BIOLEGEND, 101217, 1 in 800 dilution), F4/80 (ebiosciences, 25-4801-82, 1 in 200 dilution), Ly6G (BD, 551461, 1 in 400 dilution), and Ly6C (AbD SeroTec, mca771a647, 1 in 400 dilution) were used for flow cytometry. See Supplementary Fig. 15d for gating strategy for peritoneal exudates.
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Perihematomal Protein Analysis by Western Blot

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The Western blot was conducted as previously described.7 (link) Briefly, protein samples were obtained from the perihematomal area and BV2 cells using RIPA lysis buffer. Then, protein lysate was centrifuged for 20 min at 12,000 g at 4°C. After centrifuging, the supernatant protein solution was collected. After loading an equal amount of protein onto the gel, the electrophoresis procedure was initiated. The proteins were then transferred to PVDF membranes and blocked with a solution containing 5% bovine serum albumin (BSA) for 1 h at room temperature. After blocking, membranes were incubated with primary antibodies at 4°C overnight. The following primary antibodies were used: Dectin-1 (1:1000; ab140039, Abcam), NLRP3 (1:1000; ab263899, Abcam), ASC (1:2000; sc-33958, Santa Cruz Biotechnology), phospho-SYK (1:1000; AF3315, Affinity Biosciences), IL-18 (1:1000; 60070-1-Ig, Proteintech), GSDMD-N (1:1000; AF4012, Affinity Biosciences), caspase-1 (1:1000; 22915-1-AP, Proteintech), β-actin (1:1000; AF5003, Beyotime Biotechnology), and IL-1β (1:1000; 26048-1-AP, Proteintech). After washing three times with TBST, the membranes were incubated with secondary antibody at room temperature for 1 h and then washed a further three times. Finally, a Bio-Rad Molecular Imager was used to detect protein signals, which were quantified by Image J.
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4

Immunoblotting Analysis of NLRP3 Inflammasome

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Immunoblotting analysis was performed as described earlier (17 (link)). Briefly, cellular total proteins from PBMC were extracted using a Protein Isolation Kit (Omega Bio-Tek, Norcross, GA). Protein concentrations were determined using the bicinchoninic acid (BCA) protein assay kit (Pierce Biotechnology, Rockford, IL). Equal protein samples were run on 10% SDS gels and transferred on nitrocellulose membranes. The protein samples were incubated with primary antibodies against GAPDH(1:20,000 dilution, 60004-1-Ig, Proteintech), NLRP3(1:1000 dilution, 19771-1-AP, Proteintech) , ASC( 1:200 dilution, sc-33958, Santa Cruz Biotechnology), Caspase 1 (1:200 dilution, LS-B3394, LifeSpan BioSciences Inc), IL-1β(1:2000 dilution, 66737-1-Ig, Proteintech),IL-18(1:2000 dilution, 60070-1-Ig, Proteintech). Membranes were incubated with indicated primary antibodies overnight at 4 °C with gentle shaking. After incubation with proper secondary antibodies for 1 hr at room temperature, blotted proteins were visualized with an enhanced chemiluminescence detection system (ECL; Advansta, Menlo Park, CA).
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