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4 protocols using ab50391

1

Immunofluorescence Assay for Focal Adhesion Proteins

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Following transfection, MDA-MB-231 cells cultured on glass coverslips with different cells surfaces were washed with PBS supplemented with Ca2+ and Mg2+, then fixed for 20 min with 4% PFA (diluted in PBS) at room temperature. The cells were subsequently washed 3 times with PBS (10 min each), followed by a 10 min permeabilization with 0.5% Triton-X 100 (diluted in PBS). After 30 min of blocking-10% goat serum (diluted in 0.5% Triton-X 100), the cells were incubated for 1 h with either an antizyxin antibody (Abcam; ab50391) (1:100) or antipaxillin antibody (Abcam; ab23510) (1:100), both diluted in 2% goat serum. Excess of primary antibodies was removed by 3 sequential washes with PBS (10 min each); thereafter, the cells were incubated for 1 h with an Alexa Fluor 488 conjugated to a rabbit anti-IgG antibody (Cell Signalling; 4412; 1:100). After the removal of unbound secondary antibodies with 3 sequential washes (PBS; 10 min each time), the nuclei were stained, and the cells were mounted onto glass slides with the Fluoroshield mounting medium containing DAPI. The cells were visualised by confocal microscopy (Nikon Eclipse Ti Laser-scanner). The DAPI was detected at 350 nm/470 nm (excitation/emission) while the Alexa Fluor 488 was detected at 488 nm/510 nm (excitation/emission).
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2

Integrin β1 signaling modulation

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Antibodies against the focal adhesion protein Zyxin (ab50391, 1:200), Vinculin (ab129002, 1:200), Phalloidin (ab176759, 1:1000), and the serine-threonine kinase GSK3 (ab93926, 1:4000) were obtained from Abcam. ITGβ1 antibody was obtained from Proteintech (12594-1-AP, 1:100), while anti-γ-Tubulin antibody was obtained from Sigma (T6557, 1:3000). Secondary antibodies for immunostaining (1:500) were from Jackson ImmunoResearch Laboratories, Inc (715166150, 711545152). Secondary antibodies coupled to Infrared Dyes (IRDye 680 (926–68072) and IRDye 800 (926–32213) at 1:3000 (LI-COR) were used for western blots and analyzed with the LI-COR Odyssey system.
Primers for cloning human DN-ITGβ1 into pCS2 c-terFlag were Inte-Forward: GGCGGATCCACCATGAATTTACAACCAATTTTCTG, Inte-Reverse: GGCATCGAT TATCATTAAAAGCTTCCATATCAG. Primers for cloning human ITGβ1-WT into pCS2 Inte-WT- Reverse: GGCATCGATTTTTCCCTCATACTTCGGA. Pools of 3 target-specific ITGβ1 (sc-35674) and control siRNAs (sc-37007) were obtained from Santa Cruz Biotechnology. Xenopus laevis ITGβ1 antisense MO, sequence 5’GTGAATACTGGATAACGGGCCATCT3’, was designed with the help of GeneTools.
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3

Cytoskeletal Protein Immunostaining Protocol

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Forskolin (F6886), epinephrine (E4642), phorbol-12-myristate-13-acetate (P1585), heparin (H3149), 4′, 6-diamidino-2 phenylindole dihydrochloride (DAPI, D8417), dimethylsulfoxide (D2650) and anti-flag M2 affinity gel (A2220) were from Sigma. Rabbit anti-VWF antibody (A0082) was from Dako. Rabbit polyclonal antibody to ERK2 (sc-292838) was from Santa Cruz Biotechnology. Rabbit and mouse monoclonal antibodies against zyxin (ab109316, ab50391), mouse monoclonal antibodies to vinculin (ab18058) and mouse monoclonal antibody to mouse α-actinin (ab18061) were from Abcam. Mouse monoclonal antibody to human P-selectin (Q01102) was from R&D Systems. Rabbit polyclonal antibody to phospho-zyxin Ser 142/143 (#4863) was from Cell Signaling Technology. Alexa Fluor 488-nm-conjugated phalloidin (A12379) and Alexa Fluor-conjugated goat anti-IgG antibodies (A11008, A27039, A21424, A21052) were from Invitrogen.
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4

Antibody Validation for Cell Analysis

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The following antibodies were used in this study: anti-FLAG (WB 1:1,000, F3165; Sigma), anti-EPLIN (WB 1:1,000, IF 1:100, 50311; Cell Signaling Technology), anti-EPLIN (WB 1:1,000, IF 1:100, sc-136399; Santa Cruz Biotechnology), anti-EPLIN (WB 1:1,000, immunoprecipitation [IP] 1 μg/1 mg lysate, immunohistochemistry [IHC] 1:200, 16639–1-AP; Proteintech), anti-HA (WB 1:500, IP 2 µg/1 mg cell lysate, SC F-7; Santa Cruz Biotechnology), Alexa Fluor 568–phalloidin (IF 1:1,000, A1238; Life Technologies), SiR-actin (1:10,000, CY-SC001; Cytoskeleton), anti–β-tubulin (WB 1:2,500, 926–42211; LI-COR), anti–α-tubulin (WB 1:2,500, 23948; Santa Cruz Biotechnology), pFAK Y397 (WB 1:1,000, ab8129; Abcam), FAK S910 (WB 1:1,000, 44-596G; Invitrogen), anti–E-Cadherin (WB 1:1,000, IHC 1:200, 3195; Cell Signaling Technology), total FAK (WB 1:1,000, 610087; BD Biosciences), anti-zyxin (IF 1:1,000, ab50391; Abcam), anti-Rab40b (WB 1:500, LS-C353287; LSBio), anti-Rab40c (WB 1:500, H-8 sc-514826; Santa Cruz Biotechnology), and anti-CD63 (IF 1:100; gift from Andrew Peden, University of Shefield, Shefield, UK).
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