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Apotome microscope axioimager z1

Manufactured by Zeiss
Sourced in Germany

The Apotome Microscope (Axioimager Z1) is a high-performance optical microscope designed for advanced imaging applications. It offers structured illumination capabilities to enhance contrast and enable optical sectioning of samples. The core function of the Apotome Microscope is to provide improved image quality and depth discrimination within specimen samples.

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2 protocols using apotome microscope axioimager z1

1

Mapping Whisker Follicle-Sinus Complex

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At the end of the experiment, animals were overdosed with urethane (3 g/kg), transcardially perfused with paraformaldehyde 4 % (V/V in phosphate buffer) and their brains were removed and prepared for flattened corticotangential sectioning, as described by Lauer et al., (2018) (link). Cortical sections were stained for cytochrome oxidase, and layer IV barrel-field cytoarchitecture was visualized under bright-field light microscopy. Mystacial pads were dissected, cryoprotected in a 0.1 M phosphate buffer solution containing 30% sucrose (w/v) and cut into 50 µm thick transversal sections with a cryostat microtome (CM3050S; Leica Biosystems, Wetzlar, Germany). Sections were counterstained with the nuclear dye 4′,6-Diamidine-2′-phenylindole dihydrochloride (DAPI; Sigma-Aldrich, Germany) and actin filaments were labeled with the fluorescent conjugate ATTO 647-phalloidin (Hypermol EK, Bielefeld, Germany). Optical sections of the whisker follicle-sinus complex were acquired by confocal-like optical sectioning with an Apotome Microscope (Axioimager Z1; Carl Zeiss Microscopy GmbH, Jena, Germany). The expression of TeNT-GFP in Cre-positive mice was confirmed by the presence of a green fluorescence signal in the MC-dense region of the whisker FSC.
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2

Evan's Blue Viability Assay for Microalgae

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To quantify viability, the membrane-impermeable dye Evan's Blue was used [40, 41] . 1 ml of cell suspension was spun down in a 1.5 ml reaction tube (Eppendorf, Hamburg) at 2000 × g for 2 min (PICO 17, Thermo Scientific, Germany) before replacing the supernatant by 1 ml of 2.5% Evan's Blue (w/v, dissolved in double distilled water). After incubation for 5 min, the dye was removed by centrifugation at 2000 × g for 2 min. Then, 1 ml of fresh TAP medium was added and vortexed briefly to remove unbound dye. This was repeated until the supernatant was colourless. Finally, the cells were resuspended in 250 μl of fresh TAP medium. Aliquots of 20 μl were quantified in a hematocytometer (Fuchs-Rosenthal) under an ApoTome microscope (AxioImager Z.1; Zeiss, Germany) using a 63 × oil immersion objective. Data represent mean values and standard errors of at least 1500 cells per experiment and three independent experimental series.
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