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Pseudouridine

Manufactured by Merck Group
Sourced in China, United States

Pseudouridine is a naturally occurring modified nucleoside found in various RNA molecules. It is a structural isomer of the RNA nucleoside uridine, with the carbon-nitrogen bond shifted from the 1' to the 5' position. Pseudouridine plays a role in the structural stability and function of certain RNA molecules, but a detailed description of its core function is not available while maintaining an unbiased and factual approach.

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2 protocols using pseudouridine

1

Capillary-Based Silica Functionalization for Nucleoside Analysis

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Fused-silica capillary (250 μm i.d. × 360 μm o.d.) was purchased from Yongnian Optic Fiber Plant (Hebei, China). Tetramethoxysilane (TMOS) and 3-mercaptopropyltrimethoxysilane (MPTMS) were purchased from Wuhan University Silicone New Material (Wuhan, China). Azobisisobutyronitrile (AIBN) and poly(ethylene glycol) with the molecular weight of 6000 (PEG-6000) were all purchased from Shanghai Chemical Reagent Corporation (Shanghai, China). AIBN was purified by recrystallization from ethanol at 40°C. 3-acrylamidophenylboronic acid (AAPBA) and creatinine were purchased from Sigma-Aldrich (Beijing, China). Organic solvents were all of HPLC grade. The water used throughout all experiments was purified using a Milli-Q apparatus (Millipore, Bradford, USA). All other reagents were obtained from various commercial sources and were of analytical grade unless otherwise indicated.
2′-Deoxycytidine (dC), 2′-deoxyguanosine (dG), 2′-deoxyadenosine (dA), thymidine (T), cytidine (rC), guanosine (rG), adenosine (rA), uridine (rU), 1-methyladenosine, N6-methyladenosine, 5′-deoxyadenosine, inosine, xanthosine, 3-methylcytidine, N4-acetylcytidine, 5-methyluridine, 3-methyluridine, pseudouridine, double hydrogen zeatin-riboside (DHzR) were purchased from Sigma-Aldrich (Beijing, China). The standard solution of each analyte was prepared at 1.0 mg/mL in H2O and stored at −20°C.
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2

Quantification of Urinary Methylated Nucleosides

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Starting point. Starting from the results of our already published studies from 2006, 2007 and 2014 (9-11) , the spectrum of mNS measured in urine was supplemented by hypoxanthosine, L-tryptophan and guanosine (Table I). In total, 15 mNS and the sum of all measured mNS were quantified in the urine of study participants.
Reagents. The following mNS standards were purchased from Sigma (St Louis, MO, USA): pseudouridine, uridine, cytidine, 1-methyladenosine, 5-methylcytidine, 1-methylinosine, guanosine, xanthosine, 1-methylguanosine, 2-methylguanosine, N2,N2dimethylguanosine, N6-methyladenosine, hypoxanthosine and Ltryptophan. All of them were of HPLC purity. Ammonium dihydrogen phosphate buffer (NH 4 H 2 PO 4 ), methanol and acetonitrile were obtained from Baker (Phillipsburg, NJ, USA) of Baker-analyzed HPLC grade. Deionized water was acquired from a Milli O plus purification system (Millipore, Bedford, MA, USA).
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