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5 protocols using anti sars cov 2 s1

1

SARS-CoV-2 Protein Detection by Western Blot

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Samples in SDS solubilizer (0.0625 M Tris·HCl [pH 6.8], 10% glycerol, 0.01% bromophenol blue, and 2% [wt/vol] SDS with and without 2% 2-mercaptoethanol) were heated at 95°C for 5 min, electrophoresed through 8% or 10% (wt/vol) polyacrylamide-SDS gels, transferred to nitrocellulose membranes (Bio-Rad), and incubated with rabbit polyclonal anti-SARS-CoV-2-S1 (SinoBiological; catalog no. 40591-T62), rabbit polyclonal anti-SARS-S2 (no. JH50520001; obtained from Carolyn Machamer, Johns Hopkins University), mouse anti-C9 (EMD Millipore), mouse monoclonal anti-vesicular stomatitis virus (VSV) M (Kerafast; catalog no. EB0011), goat anti-human IgG (sc-2453; Santa Cruz Biotechnologies), rabbit monoclonal anti-hACE2 (Invitrogen; catalog no. MA5-32307), rabbit polyclonal anti-green fluorescent protein (GFP) (obtained from Katherine Knight, Loyola University Chicago), or purified LgBiT-substrate cocktail (Promega). After incubation with appropriate horseradish peroxidase (HRP)-tagged secondary antibodies and chemiluminescent substrate (Thermo Fisher), the blots were imaged and processed with a FluorChem E apparatus (Protein Simple).
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2

Quantitative Analysis of SARS-CoV-2 Viral Proteins

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The remaining 293T cells used to produce lentiviral vectors are lysed in RIPA buffer (Sigma-Aldrich, R0278) supplemented with protease inhibitor (Sigma, P8340) for 40 minutes on ice. Lysate is collected and a portion is used for SDS-PAGE on a 10% poly-acrylamide gel and transferred to a PVDF membrane for western blotting. Blots were probed with polyclonal anti-SARS-CoV-2 S1 (Sino Biological, 40591-T62; RRID:AB_2893171), anti-S2 (Sino Biological, 40590; RRID:AB_2857932), anti-p24 (NIH HIV Reagent Program, ARP-1513), and anti-GAPDH (Santa Cruz, Cat# sc-47724, RRID: AB_627678). Secondary antibodies used were Anti-Rabbit-IgG-HRP (Sigma, A9169; RRID:AB_258434) and Anti-Mouse (Sigma, Cat# A5278, RRID: AB_258232). Blots were visualized via Immobilon Crescendo Western HRP substrate (Millipore, WBLUR0500) and exposed on a GE Amersham Imager 600. Band intensities were quantified using NIH Image J analysis software (Bethesda, MD).
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3

Characterization of SARS-CoV-2 Viral Proteins

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The remaining 293T cells used to produce lentiviral vectors are lysed in RIPA buffer (Sigma-Aldrich, R0278) supplemented with protease inhibitor (Sigma, P8340) for 40 min on ice. Lysate is collected and a portion is used for SDS-PAGE on a 10% poly-acrylamide gel and transferred to a PVDF membrane for western blotting. Blots were probed with polyclonal anti-SARS-CoV-2 S1 (Sino Biological, 40591-T62; RRID:AB_2893171), anti-S2 (Sino Biological, 40590; RRID:AB_2857932), anti-p24 (NIH HIV Reagent Program, ARP-1513), and anti-GAPDH (Santa Cruz, Cat# sc-47724, RRID: AB_627678). Secondary antibodies used were anti-Rabbit-IgG-HRP (Sigma, A9169; RRID:AB_258434) and anti-Mouse (Sigma, Cat# A5278, RRID: AB_258232). Blots were visualized via Immobilon Crescendo Western HRP substrate (Millipore, WBLUR0500) and exposed on a GE Amersham Imager 600. Band intensities were quantified using NIH Image J analysis software (Bethesda, MD).
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4

SARS-CoV-2 Protein Expression Analysis

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The cell was washed twice with PBS and lysed using RIPA (Beyotime) containing 1% cocktail. Consequently, whole-cell lysates were obtained via ice lysis for 30 min. A total of 10% SDS loading buffer was added. Afterward, the lysates were electrophorized in polyacrylamide gel and transferred to the nitrocellulose membrane. The membrane was blocked with 5% BSA for 1 h and subsequently incubated with primary antibody for 3 h. The primary antibodies used were indicated as follows: anti-MDA5 (Proteintech, 21775-1-AP), anti-RIG-I (ABclonal, A18003), anti-LGP2 (ABclonal, A8257), anti-GAPDH (Proteintech, 60004-1-lg), anti-SARS-CoV-2 S1 (Sino Biological, 40591-T62), SARS-CoV-2 N (Sino Biological, 40143-MM05), anti-Flag (Cell Signaling Technology, #14793), and anti-hACE2 (Sino Biological, 10108-RP01). Following three washes with TBST, the membranes were incubated with the appropriate secondary antibody. The membranes were finally visualized using the ChemiDoc MP (Bio-Rad).
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5

Quantifying SARS-CoV-2 S1 and RBD Expression

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To determine the presence of RBD on the viral surface of rLS1-HN-RBD, and the presence of the S1 subunit on rLS1-S1-F viruses, virion particles were purified with a 25% sucrose cushion. Vero-E6 cells were harvested and washed with DPBS with 5% FBS. Approximately, 1 × 106 cells were blocked with DPBS with 5% of naïve mouse serum for 30 min at 37 °C. Then, the cells were incubated with rLS1 (0.36 mg/mL), rLS1-S1-F (0.09 mg/mL) or rLS1-HN-RBD (0.2 mg/mL) purified viruses for 30 min at 37 °C. To remove the residual viral particles not attached to Vero-E6, the cells were washed with DPBS and 5% FBS twice. Subsequently, cells were incubated with rabbit monoclonal antibody anti-SARS- CoV-2 S1 (1:200) (Sino Biological, Beijing, China) as primary antibody for 1h at 37 °C, followed by goat anti-rabbit IgG Alexa Fluor® 488 (1:200) (Abcam, Cambridge, MA, USA) as secondary antibody.
Finally, the cells were analyzed in FACS Canto II (BD Biosciences, USA) flow cytometer. The data obtained were analyzed using the software FlowJo v.10.6 (BD Biosciences, USA), where the percentage of positive cells was taken to indicate detection of the SARS-CoV-2 S1 subunit or RBD on the viral surface of viruses bound to Vero-E6.
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