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10 protocols using morada ccd camera

1

Multimodal Microscopy Techniques for Biological Imaging

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All samples immunostained were imaged using either a Zeiss multiphoton laser scanning upright microscope (Axio examiner.Z1) with Zeiss Plan-Neofluar 40×NA 0.8 or Zeiss Plan-Neofluar 63×NA 0.8 objectives, or with a Zeiss LSM 880 confocal microscope with 63×Zeiss LCI Plan-Neofluar 1.3 objective. All confocal images were acquired using ZEN 2011 Black software from Zeiss. Toluidine Blue stainings were imaged using a Zeiss ApoTome ImagerZ.1 microscope using ZEN Blue software (Zeiss). For TEM, samples were imaged with a Morgagni TEM (80 kV) using a Morada CCD camera (EMSIS GmbH) and ITEM software (EMSIS GmbH). Brightfield images of larval and adult zebrafish were imaged using an Olympus SZ61 microscope and an Olympus U-TV0.5XC-3 camera. Images were processed using Fiji (Schindelin et al., 2012 (link)) and Photoshop (Adobe). Graphs were plotted and the statistical analysis was done with GraphPad Prism 6 (GraphPad Software).
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2

Histology and TEM Fixation Protocol

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For histology and TEM, heads of 5 dpf larvae were fixed in 2% glutaraldehyde, 2% paraformaldehyde in 50 mM Hepes (pH 7.25) for 1.5 h at room temperature (RT), then at 4°C overnight. Heads were washed 5×3 min in Hepes buffer, 2×5 min in PBS, incubated for 60 min in 1% OsO4/1.5% potassium ferrocyanide in PBS, washed 2×5 min in distilled water and dehydrated in an ethanol series. Samples were incubated 2×10 min in propidium oxide and embedded in Durcupan. For histology, semithin sections of 500 nm were stained with 1% Toluidine Blue, 0.5% sodium borate solution and mounted in Entellan (Merck). Samples were imaged with Zeiss Imager.Z1 microscope using AxioCam HRc and AxioVision software (Zeiss). For TEM, ultrathin sections of 70 nm were stained with uranyl acetate and lead citrate, and imaged with a Morgagni TEM (80 kV) using a Morada CCD camera (EMSIS GmbH) and ITEM software (EMSIS GmbH). Images were processed using TrakEM2 in Fiji (Cardona et al., 2012 (link); Schindelin et al., 2012 (link)) and Adobe Photoshop.
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3

Ultrastructural Analysis of Zebrafish Podocytes

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Tg(fabp10a:gc-EGFP) embryos at 120 hpf were fixed in 4% formaldehyde/0.5% glutaraldehyde (EM-grade) in 0.1 M phosphate buffer for 2 hr at RT. For knockdown analysis embryos were injected with tmem63c ex2-sgRNA of a concentration of 250 ng/µl to enhance the observed phenotype (Figure 7E,F). Prior to analysis embryos were sorted for a clear knockdown phenotype. Samples were stained with 1% OsO4 for 2 hr, dehydrated in a graded ethanol series and propylene oxide and embedded in Poly/BedR 812 (Polysciences, Eppelheim, Germany). Ultrathin sections were contrasted with uranyl acetate and lead citrate. Sections were examined with a FEI Morgagni electron microscope and a Morada CCD camera (EMSIS GmbH, Münster, Germany). Image acquisition and quantification of podocyte foot process width and number of slit diaphragms per µm GBM was performed with the iTEM software (EMSIS GmbH, Münster, Germany).
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Transmission Electron Microscopy of Cultured Cells

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The cultured cells were fixed with 2.5% glutaraldehyde in 0.1 M cacodylate buffer (pH 7.4), then post-fixed in 1% OsO4 in the same cacodylate buffer at room temperature for 1 hour. After staining en bloc with 2% aqueous uranyl acetate for 30 min, cells were dehydrated in a graded series of ethanol to 100% and finally embedded in EMbed 812 resin. Blocks were then polymerized in a 60°C oven for 24 hr. Thin sections (60 nm) were cut by a Leica ultramicrotome and post-stained with 2% uranyl acetate and lead citrate. Sample grids were examined with a FEI Tecnai transmission electron microscope at 80 kV of accelerating voltage, and digital images were recorded with an Olympus Morada CCD camera and iTEM imaging software (EMSIS GmbH).
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5

Ultrastructural Analysis of First-Instar Larval Guts

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First-instar larval guts were dissected and fixed in 2.5% glutaraldehyde in PB (0.1M phosphate buffer [pH 7.2]), followed by fixation in 1% osmium tetroxide + 1.5% potassium ferrocyanide for 60min at 4°C. After dehydration with ethanol, guts were infiltrated and embedded in Durcupan, and ultra-thin (70nm) sections were cut using a Leica Ultracut UCT. Ultra-thin sections were contrasted with 2% uranyl acetate for 10min and lead citrate for 5min. They were then analysed using a Morgagni 268 TEM (80kV) electron microscope (FEI Company) and imaged using a side-entry Morada CCD Camera (EMSIS).
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6

FEMX-I Cell Ultrastructure Preparation

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FEMX-I cells were grown for 1–2 days in 35-mm Petri dishes. Cells were then pre-fixed by addition of an equal volume of 4% paraformaldehyde (PFA) into the cell culture medium. After one hour, cells were fixed in 4% PFA, 0.1 M CaCl2 with or without 1% glutaraldehyde in phosphate buffer overnight at room temperature or at 4 °C. After washing, cells were incubated in 1% aqueous osmium tetroxide for one hour at room temperature. Cells were then washed with water and contrasted with 0.5% aqueous uranyl acetate for 30 min at room temperature. Afterward, samples were processed through a graded series of ethanol for standard plastic embedding in LX 112 resin (LADD Research, VT). Sheets of resin embedded cells were removed from the Petri dishes by liquid nitrogen. Sections were cut at 70-nm on an UCT ultramicrotome (Leica Microsystems) parallel to the cell support (Petri dish), and post-stained with uranyl acetate and lead citrate. The samples were viewed in a Morgagni or Tecnai Biotwin T12 electron microscope (Thermo Fisher Scientific, former FEI, former Philips) and images acquired on a Morada CCD camera (EMSIS Münster Germany, former Olympus, former SIS) or F416 CMOS camera (TVIPS, Gilching, Germany).
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7

Transmission Electron Microscopy of Extracellular Vesicles

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EVs were isolated from individual plasma as described above. For TEM, the EV pellets were fixed with 2.5% glutaraldehyde in 100 mM sodium cacodylate buffer (pH 7.0) for 1 h at 4 °C. The EVs were then resuspended in 100 mM sodium cacodylate buffer (pH 7.0), placed on to a grid with a glow discharged carbon support film and stained with 2% aqueous Uranyl Acetate (Sigma-Aldrich, Gillingham, UK). Individual EVs were imaged by TEM using a Morada CCD camera (EMSIS GmbH, Münster, Germany) and processed via iTEM (EMSIS).
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8

TEM Imaging of Isolated OMVs/MVs

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A suspension of isolated OMVs/MVs (1.4 × 108 vesicles/ml) was used for TEM imaging. Mesh copper grids were prepared with glow discharged carbon support films and 10 μl of OMV/MV samples applied to the grid and incubated for 2 min. The grids were then washed five times with 50 μl of 1% aqueous uranyl acetate. The last drop was left to incubate on the grid for 1.5 min before being wicked off by torn filter paper. Grids were left to dry for 5 min before being viewed. Micrographs were taken with a JEOL JEM 1230 transmission electron microscope (JEOL, Japan) operated at 80 kV at a range of magnification mainly around a magnification of 80,000–100,000. Digital images were recorded on a Morada CCD camera (EMSIS, Germany) and processed via iTEM (EMSIS, Germany).
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9

Visualization of Extracellular Vesicles by TEM

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The EV pellets obtained from plasma, as described above for each individual, were fixed with 2.5% glutaraldehyde in 100 mM sodium cacodylate buffer (pH 7.0) for 1 h at 4 °C. EVs were then resuspended in 100 mM sodium cacodylate buffer (pH 7.0) and placed on to a grid with a glow-discharged carbon support film. The EVs were stained with 2% aqueous Uranyl Acetate (Sigma-Aldrich, Gillingham, UK) and imaged by using transmission electron microscopy (TEM) with a Morada CCD camera (EMSIS GmbH, Münster, Germany), processed via iTEM (EMSIS).
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10

Transmission Electron Microscopy of Membrane Vesicles

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A suspension of isolated MVs (1.4 × 108 MVs/ml) was used for TEM imaging. MV samples (10 μL) were applied to mesh copper grids, prepared with glow discharged carbon support films, and incubated for 2 min. The grids were then washed five times with 50 μl of 1 % aqueous uranyl acetate. Grids were left to dry for 5 min before being viewed. Micrographs were taken with a JEOL JEM 1230 transmission electron microscope (JEOL, Japan) operated at 80 kV at a magnification of 80,000 to 100,000. Digital images were recorded using a Morada CCD camera (EMSIS, Germany) and processed via iTEM (EMSIS).
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