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1

Extracellular Matrix Functionalization Protocol

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D-glucuronic acid (G526), 4-methylumbelliferone (M1381), HA sodium salt from Streptococcus equi mol wt 15,000 to 30,000 (97616), 1,6-Hexanediol (H11807), N-acetyl-D-glucosamine (A3286), heparin sodium salt from porcine intestinal mucosa (H3393), D-mannitol (M4125), (3-aminopropyl)trimethoxysilane (281778), and 70% (v/v) glutaraldehyde (G7776) were from Sigma-Aldrich. 2% (w/v) bis acrylamide (1610142) and 40% (w/v) acrylamide solutions (1610140) were from Bio-Rad Laboratories. TEMED (TB0508) was from Bio Basic. Ammonium persulfate (17-1311-01) was from Life Sciences, and hyaluronidase from Streptomyces hyaluronlyticus (389561) was from Millipore Corp. Collagen I (354236) was from BD Bioscience. Sulfo-SANPAH crosslinker (A35395) was from Thermo Fisher Scientific. Recombinant human protein arginine deiminase 4 (PAD4) was from Cayman Chemical, Inc.
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2

Nucleic Acid Detection Protocol

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10× ThermoPol® Reaction Buffer, Deoxynucleotide (dNTP) Solution Mix, BSA, MgSO4, Nt·BstNBI and Bst 2.0 WarmStart® DNA Polymerase were purchased from NEB (Ipswich, MA). Enzyme concentrations were estimated from specific activities and molecular weights provded by the manufacturer. Ambion® Buffer Kit (Tris-HCl and KCl), SYBR Green II RNA Gel Stain, SYBR Gold Nucleic Acid Gel Stain and Novex TBE-Urea Sample Buffer (2×) were purchased from Thermo Fisher Scientific (Waltham, MA). Glycerol was purchased from Sigma (Burlington, MA). The UDAR templates, 10/60 DNA ladder, nuclease-free water and 1× TE buffer were purchased from IDT (Coralville, IA). The triggers were purchased from Eurofins Genomics (Louisville, KY). Oligonucleotide sequences can be found in the ESI (Table SI 1). 40% Acrylamide/Bis Solution, 29:1, Ammonium Persulfate (APS) and Urea were purchased from Bio-Rad (Hercules, CA). TEMED (Tetramethylethylenediamine) was purchased from Bio Basic Inc. (Amherst, NY). 10× TBE Buffer Concentrate (0.89 M Tris, 0.89 M boric acid, 20 mM EDTA, pH 8.3) was purchased from IBI Scientific (Dubuque, IA).
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