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4 protocols using α rabbit hrp

1

Characterization of Fyn Kinase Regulation

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The pcDNA3.1-PKACα-YFP plasmid was a gift from Manuela Zaccolo from the University of Padua, previously described [22 (link)]. pRK5 and pRK5-Fyn constructs [23 (link)] were acquired from Addgene (Cambridge, MA, USA): human pRK5-Fyn WT (wild type), pRK5-Fyn KD (K299M, kinase dead), and pRK5-Fyn ΔSH3 (deletion of 76-141). The pcDNA3-YFP plasmid and pcDNA3.1-EV were obtained from Addgene (Cambridge, MA, USA). The pFlag-CMV2 LARP4 and pFLAG-CMV2 plasmids were a gift from Richard Maraia from the National Institute of Health, previously described [24 (link)]. The Fyn-Y3D mutant (Fyn-Y3D), possessing three tyrosine-to-aspartate mutations in the SH2 domain (Y185D, Y213D, and Y214D), was described previously [25 (link)].
The following primary antibodies were used for immunoblotting: α-Fyn (FYN3) and α-PKACα (C-20) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA), α-phosphotyrosine (4G10) was purchased from EMD Millipore (Billerica, MA, USA), α-Myomegalin was obtained from Thermo Scientific (Waltham, MA, USA), α-AKAP9 and α-CDK5RAP2 were obtained from Bethyl Laboratories (Montgomery, TX, USA), and α-tubulin was purchased from Cell Signaling Technology (Danvers, MA, USA). Secondary antibodies (α-mouse-HRP and α-rabbit-HRP) were purchased from Jackson ImmunoResearch (West Grove, PA, USA).
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2

Investigating STK11 and p53 Signaling

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Dulbecco’s modified eagle’s medium and RPMI 1640 were purchased from Thermo Scientific (Waltham, MA), fetal bovine serum was obtained from R&D Systems (Minneapolis, MN). Wild-type (WT; Addgene #8590) and kinase-dead (Addgene #8591) STK11 plasmids along with the p53-driven firefly luciferase (PG13-luc) and constitutive Renilla luciferase (pRL-SV40) plasmids, and the Cas9 and sgRNA plasmid used for asymmetric repair (pSpCas9(BB)-2A-GFP (PX458)) were obtained from Addgene (Cambridge, MA). Antibodies directed against LKB1 (E-9; #sc-374334), p53 (D0-1; #sc-126), Actin (C-2; #sc-8432), STRADα (G-8; sc 515635), MO25 (#2716) and Tubulin (#2144) were obtained from Santa Cruz Biotechnology (Dallas, TX) and Cell Signaling Technology (Danvers, MA), respectively. Secondary antibodies (α-mouse-horseradish peroxidase [HRP] and α-rabbit-HRP) were purchased from Jackson ImmunoResearch Laboratories (West Grove, PA). All other reagents were purchased from Fisher Scientific (Waltham, MA) unless otherwise noted.
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3

Dissection and Immunostaining of Drosophila Larval Fillets

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Wandering 3rd instar larvae were pinned on Sylgard (Dow Corning), and bathed in ice-cold PBS. The body wall was cut along the dorsal midline, and visceral organs were removed. The fillets were pinned flat and fixed with 4% paraformaldehyde in PBS for 30 mins. Fixed fillets were washed with 0.1% Triton X-100 in PBS before primary antibody incubation. Antibody dilutions: 1:200 rabbit α-HRP (Jackson), 1:100 mouse α-DLG, 1:500 rabbit α-GFP (Invitrogen), 1:500 mouse α-myc (Sigma), 1:1000 rabbit α-pMAD (Persson et al., 1998 (link)), 1:100 rabbit α-pMAD (S463/465) (41D10, Cell Signaling), 1:100 mouse α−β-Gal (40-1a), 1:500 mouse α-Wg. After incubation with primary antibodies overnight at 4°C, the fillets were washed and probed with appropriate fluorophore-conjugated secondary antibodies (Alexa Fluor 488/568/647 goat anti-mouse/rabbit/guinea pig) (Invitrogen) at room temperature for 1.5 hrs. Samples were mounted on glass slide with DAPI-containing Vectashield (Vector Labs). The monoclonal antibodies against DLG, β-Gal, and Wg were obtained from the Developmental Studies Hybridoma Bank (DSHB) developed under the auspices of the NICHD and maintained by The University of Iowa, Department of Biology, Iowa City, IA 52242.
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4

Immunostaining of Drosophila Larval Tissue

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Larval preparations were fixed for 20 min at room temperature (RT) with 4% formaldehyde (Sigma #47608) in 1x phosphate buffered saline (PBS; pH 7.4), next larval fillets were permeabilized with 0.4% PBX (TritonX-100 in 1X PBS). Tissue was blocked for 1 h with 10% NGS in PBX and incubated overnight at 4 °C with primary antibodies. After several washes, larval fillets were incubated with secondary antibodies for 2 h in blocking solution at RT and washed with 0.4% PBX. Samples were mounted in Vectashield (Vector Laboratories). The following antibodies were used to label third instar Drosophila larvae: mouse α-Dlg [1:50 (DSHB; 4F3)], rabbit α-HRP [1:1000 (Jackson ImmunoResearch)], rabbit α-HA [1:200 (Cell Signaling Technologies; C29F4)], mouse α-Dynamin [1:50 (BD Biosciences, clone 41)], rabbit α-Synj [1:2000;19 (link)], mouse α-Brp [1:50 (DSHB; nc82)]. Alexa Fluor 488-/Alexa Fluor 555-conjugated secondary antibodies (Invitrogen) were used 1:1000.
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