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46 protocols using annexin 5

1

Annexin V-FITC/PI Apoptosis Assay

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Cells in each group were collected 48 h after transfection and digested with trypsin to prepare cell suspension. Cells were resuspended with 500 µL Binding Buffer. 10 µL Annexin V-FITC and 5 µL PI were mixed and added for incubation in the dark for 30 min (Sigma-Aldrich). Novoexpress software was used to analyze the percentage of early (Annexin V+, PI-) and late apoptotic cells (Annexin V+, PI+) (Beyotime).
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2

Resveratrol-Induced Apoptosis Signaling Pathway

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A caspase-3 assay kit ((Sigma SCP0084)), anti-β-actin (A2547), anti-rabbit-secondary antibody (Sigma A0545), and anti-mouse-secondary antibody (Sigma A9044) were purchased from Sigma (St. Louis, MO, USA). Resveratrol was kindly given by Chongqing Kerui Nanhai Pharmaceutical Company and a 500 mM stock solution was made in DMSO (0.1% v/v final concentration) stored at − 80 °C. Antibody against phospho-LKB-1 (sc-271,934), Bcl-2 (sc-492), AMPK (sc-19,128), phospho-AMPK (sc-101,630), Bax (sc-6236), and Beclin-1 (sc-11,427) were purchased from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). Compound C (sc-200,689) and Z-DEVD-FMK (sc-311,558) were also purchased from Santa Cruz Biotechnology Inc. Antibody against cleaved caspase-3 was purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against Bid (bs-1153R) were purchased from Beijing Biosynthesis Biotechnology Co., Ltd. (Beijing, China). RPMI 1640 medium was obtained from Gibco and fetal bovine serum was purchased from Shanghai Excell Biological Technology Co., Ltd. (Shanghai, China). Annexin V, propidium iodide (PI) and the caspase-3 inhibitor Ac-DEVD-CHO (C1206) were obtained from the Beyotime Institute of Biotechnology (Jiangsu, China).
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3

Leptin-Induced Apoptosis Evaluation

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In 6-well plates, 2×105 cells/well were seeded and cultured overnight. Following treatment with 0.5 µg/ml leptin for 24 h, the cells were trypsinized and washed with PBS. The cells were suspended in 0.3 ml binding buffer, following by the addition of 2 µl Annexin V (Beyotime Institute of Biotechnology, Haimen, China) and careful pipetting of the mixture. Following the addition of 5 µl propidium iodide (PI; Beyotime Institute of Biotechnology), the mixture was incubated for ~10 min at room temperature. The rates of apoptosis were detected using a FACSCSalibur flow cytometer (Becton-Dickinson; BD Biosciences, San Diego, CA, USA).
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4

Apoptosis Analysis of Transfected NP Cells

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Briefly, transfected NP cells were cultured into 6‐well plates at a density of 2 × 105 cells/well and incubated at 37°C for 24 h under 5% CO2. Then, 5 μl Annexin V (C1062M, Beyotime) was added for 15 min, followed by 5 μL propidium iodide (PI) (C1062M, Beyotime) and mixing. The reaction was performed at room temperature and protected from light for 20 min. Finally, apoptosis was detected on a Cytomics FC‐500 flow cytometer (Beckman Coulter) using Beckman CXP software within 1 h after the reaction.
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5

Apoptosis Evaluation in HepG2 and SMMC-7721 Cells

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A total of 1×105 HepG2 and SMMC-7721 cells were seeded in six-well plates and treated with DMSO (the control), 500 μM DFMO, 2.5 μM compound 3K, and the combination (DFMO and compound 3K) for 24 and 48 h. After washing three times with phosphate-buffered saline (PBS), the cells were stained using 5 μL Annexin V (Beyotime, Wuhan, China) and 10 μL propidium iodide (PI; Beyotime, Wuhan, China) for 30 min at room temperature. The apoptotic rate was evaluated using a Becton-Dickinson FACScan cyto-fluorometer (New Jersey, USA). Total apoptosis rate (%) = Q2+Q3.
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6

Annexin V-PI Apoptosis Assay of CD133+ Miapaca-2 Cells

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CD133+ miapaca-2 cells in logarithmic phase were incubated with different concentrations of Lxn (Abcam, London, UK, ab87145; 0 ng/μL, 5 ng/μL, 10 ng/μL, 20 ng/μL and 40 ng/μL) in SFM for 48 hours; cells of treated and control groups were collected and digested with ethylene diamine tetraacetic acid (EDTA) trypsinase. Cells were collected, washed twice with ice-cold PBS, and then precipitated by centrifugation at 500 g for 10 minutes; the cell pellets were resuspended in 1 × Annexin V binding buffer. To a 100-μL aliquot of the cell suspension, 5 μL of Annexin V (20 μg/mL; Beyotime, Jiangsu, China) and 5 μL of propidium iodide (PI; 50 μg/mL; Beyotime, Jiangsu, China) were added, and the cells were incubated in the dark for 15 minutes at room temperature (25°C). Flow cytometry was performed using FACSCalibur (Becton-Dickinson, San Jose, CA, USA). The data from a total of 10,000 events were analyzed using CellQuest software (Becton-Dickinson Immunocytometry Systems, San Jose, CA, USA). The percentage of Annexin V-positive or PI-positive cells was calculated.
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7

Annexin V-PI Apoptosis Detection

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Annexin V (Beyotime Institute of Biotechnology)/propidium iodide (PI; Beyotime Institute of Biotechnology) double staining was conducted to detect apoptosis. Suspended cells were collected in 15 ml centrifuge tubes (5×106 cells/tube), and centrifuged at 200 × g for 5 min. The supernatant was discarded and the cells were resuspended with PBS. Annexin V labeled with fluorescein isothiocyanate was added, which is indicated by green fluorescence, and PI was added, which is indicated by red fluorescence, and incubated for 20 min in a dark place. The proportion of Annexin V+/PI cells were visualized by flow cytometer (FACSCalibur; BD Biosciences, Franklin Lakes, NJ, USA) and analyzed with CellQuest Pro (BD Biosciences).
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8

Apoptosis Analysis by Flow Cytometry

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Cells (1×106/well) were cultured in a 6-well plate. After the cells became adherent, the medium was aspirated and cells were suspended, centrifuged (4,000 × g for 5 min) and fixed in 75% precooled ethanol overnight at −20°C. Following centrifugation, the supernatant was discarded and the sediment was washed twice with PBS, resuspended in PBS (480 µl/well) and stained with 10 µl Annexin-V and propidium iodide (PI; Beyotime Institute of Biotechnology). Cellular apoptosis was analyzed by flow cytometry (BD FACSCalibur; BD Biosciences, San Diego, CA, USA).
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9

Ferroptosis Modulators in Cell Assays

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Antimycotics (#15240062), fetal bovine serum (FBS, #10091148), RPMI 1640 medium (#A1049101), and Dulbecco's modified Eagle's high glucose medium (#11965118) were purchased from HyClone (HyClone, Logan, UT, USA). Cell Counting Kit-8 (CCK-8, #CK04) was obtained from Dojindo (Dojindo Laboratories, Kumamoto, Japan). The malondialdehyde (MDA) assay kit (#A003-1-2) and reduced glutathione (GSH) assay kit (#A006-2-1) were purchased from Jiancheng (Jiancheng, Nanjing, China). The DAPI staining solution kit (#MA0127) and zinc protoporphyrin-9 (#MB4231) were purchased from Meilui (Meilui, Dalian, China). Liperfluo (#L248) was purchased from Dojindo (Dojindo Laboratories, Shanghai, China). 2′,7′-Dichlorodihydrofluorescein diacetate (DCFH-DA, #S0033S), Annexin V (#C1062M-1), and Propidium Iodide (PI, #C1062M-3) were purchased from Beyotime (Beyotime, Shanghai, China). For western blot analysis, antibodies against HO-1 (#ab13243), GPX4 (#ab40993), Nrf2 (#ab137550), and β-actin (#ab8226) were purchased from Abcam (Abcam, Cambridge, MA). The Iron Assay Kit (#MAK025), dimethyl sulfoxide (DMSO, #D2650), curcumin (#C1386), z-VAD-fmk (#V116), ferrostatin-1 (#SML0583), and deferoxamine (#D9533) were purchased from Sigma (Sigma, St Louis, USA). These compounds were dissolved in DMSO (at final concentrations less than 0.1% (v/v)).
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10

MTT Assay and Western Blotting Protocol

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Methyl thiazolyltetrazolium (MTT) and conventional reagents of cell culture were procured from Gibco (Thermo Fisher Scientific, Waltham, MA, USA). Cell Counting Kit-8 was procured from MCE (Shanghai, China). Antibodies for Western blotting were procured from Cell Signal Technology (Danvers, MA, USA). AnnexinV and DHE-DCFDA was purchased from Beyotime Biotechnology (Shanghai, China). Hoechst and MitoSOX were procured from Invitrogen (Thermo Fisher Scientific, Waltham, MA, USA). Other chemicals and reagents were purchased from local suppliers and were of analytical grade.
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