The largest database of trusted experimental protocols

52 protocols using quinacrine

1

Karyotypic Stability Across Generations

Check if the same lab product or an alternative is used in the 5 most similar protocols
The karyotype study was repeated on three different populations and karyotypic stability was assessed on three different generations. Cytogenetic analysis was carried out by setting up two independent cultures, each obtained by seeding 105 cells on a slide (amnio-dish) placed on the bottom of Petri dishes (Corning, NY, USA). Cells were seeded at a density of 1.2 × 103 cell/cm2 in proliferative medium. In the first culture, cells were blocked with colchicine after 24–96 h from seeding, at a confluence of 20%, while the second culture was blocked 24 h after. Subsequently, the metaphases were blocked with colcemid (Merck) and cells were maintained in culture for 12–16 h. The osmotic treatment was then carried out by incubation in hypotonic solution (KCl 0.075 M, Merck) and fixation with a solution of methanol, ethanol and acetic acid (2:1:1, v/v) (Merck). The slides were then extracted from the Petri dishes and dried under controlled temperature (26 °C) and humidity (36% RH) conditions. For the Q-banding method using quinacrine (QFQ), the slides were immersed in a quinacrine (Merck) solution in McIlvaine buffer, kept in the dark for 10 min and, after rinsing in the same buffer, mounted. The metaphases were visualized by fluorescence optical microscopy and acquired through an image analysis system.
+ Open protocol
+ Expand
2

Quinacrine Visualization of Vesicular ATP

Check if the same lab product or an alternative is used in the 5 most similar protocols
Quinacrine [4-N-(6-chloro-2-methoxyacridin-9-yl)-1-N,1-N-diethylpentane-1,4-diamine] was used to visualize vesicular ATP, a fluorescent dye widely used to detect ATP-enriched vesicles (Gutierrez-Martin et al., 2011 (link)). Quinacrine staining was carried out by incubating granule cells for 15 min at 37°C in Locke’s buffer (140 mM NaCl, 4.5 mM KCl, 2.5 mM CaCl2, 1.2 mM KH2PO4, 1.2 mM MgSO4, 5.5 mM glucose and 10 mM HEPES [pH 7.4]) containing 4 μM Quinacrine (Sigma–Aldrich). Time-lapse studies were performed with an Olympus IX81 inverted microscope equipped with a 100X, 1.45 NA, oil-immersion objective. Images were acquired every 200 ms with a Hamamatsu C9100 EM-CCD digital camera (Hamamatsu) controlled by CellR software (Olympus). Vesicular fusion and release into the extracellular space was observed as a rapid loss of the Quinacrine signal. During the assays, cells were continuously perfused with Locke’s buffer at a rate of 1.5 ml/min at 37°C. Perfusion was gravity-driven and solution exchange was performed by manually operating electronic valves of a VC-6 drug application system (Warner Instruments). Images were processed using the ImageJ free software v.1.50i (National Institutes of Health, Bethesda, MD, United States).
+ Open protocol
+ Expand
3

Small Molecule Inhibitor Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
AA, AdOx, quinacrine, monensin, MG132, and AZA were obtained from Merck (Madrid, Spain). Antibodies used in this study are listed in Supplementary information Methods.
+ Open protocol
+ Expand
4

Characterization of Cysteine Protease Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hemin chloride, chloroquine, quinacrine, amodiaquine, mefloquine, 8-hydroxyquinoline, quinine, quinidine and the β-carbolines norharman, tryptoline, harman, and harmine were obtained from Sigma-Aldrich. Indazole compounds 1,1´-[2,2´-biphenyldiyl)bismethylene]bis(5-nitro-1H-indazol-3-ol) (DIM-32) and 1,1´-(o-xylylene)bis(5-nitro-1H-indazol-3-ol) (DIM-5) were previously synthetized45 (link). 3,3′,5,5′-Tetramethylbenzidine (TMB), 2,2′-azinobis(3-ethylbenzthiazoline-6-sulphonic acid) (ABTS) and tween 20 were obtained from Sigma and cysteine from Merck. DMSO and hydrogen peroxide (H2O2) were from Scharlau and Panreac, respectively. Globin was obtained from bovine hemoglobin (Sigma) by precipitation in acetone-0.1% HCl at low temperature89 (link),90 (link), and lab-stored crystallized and lyophilized bovine serum albumin (BSA) was from Sigma. cysteine proteases: papain from Carica papaya, ficin from fig tree latex and cathepsin B from bovine spleen were obtained from Sigma. The peptide Z-Phe-Arg-AMC was purchased from Bachem, and 7-amino-4-methylcoumarin (AMC) from Sigma.
+ Open protocol
+ Expand
5

Vasoactive Compound Experiments

Check if the same lab product or an alternative is used in the 5 most similar protocols
Serotonin, U46619, quinacrine, indomethacin, and SQ29548 were obtained from Sigma-Aldrich and dissolved on the day of the study.
+ Open protocol
+ Expand
6

Immunoblotting and Immunofluorescence Analysis of Autophagy Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Commercial antibodies include: phospho-Histone H3 (Cell Signaling Technology (CST) 9701), cleaved caspase-3 Alexa Fluor 488 (CST 9669S), phospho-p44/42 MAPK (P-ERK) (Invitrogen 44–680G), p44/42 MAPK (ERK1/2) (Invitrogen 13–6200), ATG12 (CST 2010), ATG7 (Santa Cruz Biotechnology sc8668), p62 (Progen Biotechnik GP62C), tubulin (Sigma T6199), p53 (DO1, Calbiochem OP43), cleaved PARP (CST 9451), G6PD (Abcam ab993) LC3 5F10 for IF (Axxora NT0231-00). For immunobloting, we utilized an LC3 antibody which has been described previously and is now commercially available (EMD Millipore ABC232) (35 (link)). Chemicals include: chloroquine (CQ), quinacrine (Q), 6-aminonicotinamide (6-AN), N-acetyl Cysteine (NAC), etoposide (Et) and doxorubicin (DX), all from Sigma-Aldrich, staurosporine (STS, EMD Chemicals), 1-13C glucose (Cambridge Isotopes), 1-14C glucose and 6-14C glucose (Perkin Elmer), and Hoechst (Invitrogen).
+ Open protocol
+ Expand
7

Lipid Trafficking and Stress Response

Check if the same lab product or an alternative is used in the 5 most similar protocols
Aureobasidin A was obtained from Takara Shuzo Co, tunicamycin from Sigma Aldrich, FM4-64 from Molecular probes (T-13320), dihydroethidium (DHE) from Marker gene technologies. Calcoflour white (CFW), myriocin, quinacrine, and N-acetyl-L-cysteine (NAC) from Sigma-Aldrich, [3H]myo-inositol from ANAWA Trading SA. Anti-Kar2 and anti-Gas1 antibodies were the kind gifts of Drs. M. Rose and F.Reggiori, anti-CPY antibodies (A-6428) were from Molecular Probes. Secondary antibodies were anti-rabbit IgG peroxidase conjugate (Sigma A6154) and anti-mouse IgG peroxidase conjugate (Sigma A4416). PVDF membranes were obtained from Millipore, Cat.No IPVH00010.
+ Open protocol
+ Expand
8

High-Throughput Screening of LOPAC1280 Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
For screening, 1266 mechanistically annotated compounds, many of them previously used in the clinical setting, from the LOPAC1280 substance library (Sigma-Aldrich) were used. The compounds were dissolved in dimethyl sulfoxide and further diluted with phosphate-buffered saline. For further testing, quinacrine was purchased from Sigma-Aldrich. For the screening, 384-well plates were prepared with final test concentrations of 10 μM using a Biomek 2000 as described previously.17 (link) For dose–response studies at seven concentrations in twofold dilutions, final test plates were prepared from source plates containing drug solutions at 10 mM using an acoustic dispensing Echo 350 instrument equipped with Labcytes Access robotics (Labcyte Inc., CA, USA).
+ Open protocol
+ Expand
9

Time-Lapse Analysis of Mast Cell Degranulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
For analysis of the time course of mast cell degranulation, approximately 5 × 105 cells were stained with 20 nM quinacrine (Sigma) for 10 min in humidified 37 °C incubator with 5% CO2. After washing twice with 37 °C pre-warmed PBS, cells were resuspended in 150 µl of supplemented media and seeded to a 35 mm glass bottom microwell dish (#P35GC-1.5-10-C, MatTek Corporation, MA, USA). BMMCs were either stimulated with 100 ng/ml of OVA-TNP to initiate degranulation or left untreated to evaluate impact of auto bleaching under the microscope. Degranulation was monitored by time-lapse on a confocal microscope (Zeiss LSM 510 Meta instrument; 63x magnification, pinhole 1.4 and 1.29 air unit). Z-stack images of 10 pictures/stack and 4 scans/slide were taken every 30 sec over a period of 75 min. Imaging analysis was done with IMARIS 7.4 (Bitplane AG, Zurich, Switzerland)
+ Open protocol
+ Expand
10

Quinacrine Staining for Acidified Vacuoles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Quinacrine (Sigma) staining was performed as previously described41 (link) (Hughes and Gottschling). Briefly, cells were washed once in YEPD + 100 mM HEPES, pH 7.6 and resuspended in 100 μl of the same buffered media containing 200 μM Quinacrine. Cells were incubated for 10 min at 30 °C and then 5 min on ice, followed by pelleting and washing twice with ice cold 100 mM HEPES, pH 7.6 + 2% glucose. Cells were resuspended in 100 mM HEPES, pH 7.6 + 2% glucose for imaging. Quinacrine staining was performed for cells in several conditions: (i) exponentially growing cells from 2% glucose, (ii) cells after 90 min of starvation in 0.2% glucose, (iii) cells after 90 min of starvation in 0.02% glucose, (iv) cells after a 20-min recovery in 2% glucose following starvation in 0.2% glucose, and (v) cells after a 20-min recovery in 2% glucose following starvation in 0.02% glucose. Prior to imaging, cells were kept on ice and all images were obtained within 30 min of staining. Supplementary Fig. 17b presents an example of quicacrine stained (acidified) vacuole, and only such vacuoles were scored as positive for Quinacrine staining, i.e., acidified. Concanamycin A (Sigma) was added to cultures at a final concentration of 500 nM to achieve the inhibition of vacuolar acidification.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!