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20 protocols using ab150108

1

Histological Analysis of Spinal Cord

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The spinal cords were fixed with 4% paraformaldehyde (PFA), embedded in paraffin, and cut into slices of 4 μm thickness. After deparaffinization and rehydration, hematoxylin-eosin (HE) and Luxol Fast Blue (LFB) staining were performed as previously described [19 (link)]. For fluorescence immunohistochemistry, the sections were incubated overnight with mouse monoclonal primary antibody against IBA1 (Servicebio, GB12105, 1:150) at 4 °C, followed by staining with a donkey anti-mouse IgG secondary antibody (Abcam, ab150108, 1:200). For fluorescence immunocytochemistry, the cells were harvested after gently repeated blowing, centrifuged at 1000 rpm, fixed with 4% PFA, permeabilized with 0.1% Triton ×100, and incubated with primary mouse monoclonal anti-MGO antibody (Abcam, ab243074, 1:200) at 4 °C overnight, followed by staining with donkey anti-mouse IgG secondary antibody (Abcam, ab150108, 1:200). All images were captured using Olympus BX51 or LEICA DMi8 microscope.
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2

Cochlear Hair Cell Morphology Analysis

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Cochlear whole mounts (two rats per group) were prepared to examine the morphology of the outer hair cells of the cochlea [27 (link),28 (link)]. The cochleae were dissected, and the otic capsule bone was decalcified. Free-floating, dissected cochlear outer hair cells were subjected to immunofluorescent staining. The primary antibodies 1:1000 anti-myosin 7A (Sc74516; Santa Cruz) were incubated overnight at 4 °C. The secondary antibodies 1:2000 Alexa 594 anti-mouse IgG (ab150108; Abcam) and 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI) were incubated for 2–3 h. The cochlear tissues were mounted on slides and imaged using a confocal microscope (Zeiss LSM 880; Zeiss, Land Baden-Württemberg, Germany).
H&E staining (n = 2 rats per group) was performed to examine the organ of Corti and spiral ganglion cells [29 (link),30 (link)]. Dissected cochleae were embedded in paraffin blocks, and the cochlear blocks were sectioned at a thickness of 10 µm. The slides were stained with H&E solutions (hematoxylin for 5 min and eosin for 45 s). The stained slides were examined using the EVOSTM XL Core Imaging System (#AMEX1000; Invitrogen, Carlsbad, CA, USA).
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3

Immunohistochemical Analysis of Rat Spinal Cord Injury

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After deep anesthesia, the rats received 200 ml of 0.9% saline followed by 200 ml
of 4% paraformaldehyde. The lumbar enlargement (L4-L6) was harvested and
postfixed in 4% paraformaldehyde for 6–8 h, then transferred to a 30% sucrose
solution and stored at 4°C, dehydrated and allowed to sink to the bottom. Twenty
micrometer-thick frozen sections were cut with a freezing microtome and blocked
in 10% donkey serum and 0.4% Triton X-100 in 0.01 m PBS for 2 h. The
sections were divided into six groups and incubated with primary antibodies at
4°C for 24 h. After washing three times with PBS, the sections were incubated
with secondary antibodies for 2 h at room temperature. The primary antibodies
used in the present study were rabbit anti-p-PAK1 (1:1,000, Affinity, AF3424),
mouse anti-NeuN (1:1,000, MAB377, Millipore), goat anti-glial fibrillary acidic
protein (GFAP) (1:500, Abcam, ab53554), goat anti-Iba1 (1:300; Abcam, ab48004),
and rabbit anti-Rac1 (1:200, Affinity, AF4200), Donkey Anti-Rabbit IgG H&L
(Alexa Fluor® 488) (1:500, Abcam, ab150073), Donkey Anti-Goat IgG H&L (Alexa
Fluor® 594) (1:500, Abcam, ab150132), Donkey Anti-Mouse IgG H&L (Alexa
Fluor® 594) (1:500, Abcam, ab150108). Details can be found in a previous
work.36 (link) Images were obtained under a confocal laser scanning
fluorescence microscope (Olympus FV1000, Japan).
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4

Immunofluorescence Staining of T Cells

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Human peripheral blood T cells or murine T cells were fixed with cold methanol for 2 minutes, followed by permeabilization using 0.1% Triton X-100 for 3 hours. The fixed T cells were incubated with antibodies against DUSP8 (1:200), Pur-α (1:200, clone 1C10, Abcepta), BATF (1:200, 8638, Cell Signaling Technology), PU.1 (1:500, MA5-15064, Invitrogen), or IRF-4 (1:100, 4964, Cell Signaling Technology) at 4 °C for overnight, followed by incubation with Alexa Fluor-488 anti-rabbit IgG (1:400, ab150061, Abcam) and Alexa Fluor-594 anti-mouse IgG (1:400, ab150108, Abcam) antibodies for 1 hour. For detection of IL-9, the stained cells were further incubated with anti-hIL-9-PerCP-Cy5.5 (1:100, clone MH9A3, BD Biosciences) antibody for 2 hours. Cell nucleus was stained with DAPI. DAPI, 4′,6-diamidino-2-phenylindole. Confocal images were acquired by Leica TCS SP5 II confocal microscope.
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5

Immunohistochemical Analysis of Hippocampal Microglia, Neurogenesis, and Proliferation

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In order to evaluate the activity of microglia/macrophages in the mouse hippocampi, immunostaining was performed using anti-Iba-1 rabbit polyclonal antibodies (1:500, ab108539) and anti-CD86 rabbit monoclonal antibodies (1:1,000, ab53004; both from Abcam, Cambridge, MA, USA). For the analysis of neurogenesis, the determination of the number of newly-formed neurons in the dentate gyrus (DG) subgranular zone (SGZ) was performed using anti-doublecortin (anti-DCX) antibody (1:500, ab18723; Abcam). Appropriate secondary antibodies conjugated to horseradish peroxidase (PI-1000, anti-rabbit; PI-2000, anti-mouse) were used according to the manufacturer's instructions (1:100; Vector Laboratories, Burlingame, CA, USA). Proliferating cell nuclear antigen (PCNA)-immunoreactivity was determined using anti-PCNA mouse monoclonal antibodies (1:500, ab29) and NeuN rabbit monoclonal antibodies (1:1,000, ab177487; both from Abcam) in the DG SGZ. Appropriate fluorescent secondary antibodies (anti-mouse, ab150108; anti-rabbit, ab150080) were used according to the manufacturer's instructions (1:500; Abcam). Following incubation with the antibodies (4°C, 24 h for primary antibodies and room temperature, 45 min for secondary antibodies), the sections were embedded in Fluoroshield mounting medium with DAPI (ab104139; Abcam).
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6

Antibody Characterization for Neuronal Studies

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The mouse antibodies used were as follows: anti-NeuN (Ab104225, Abcam, dilution IF: 1:500). Rabbit antibodies used in this study were as follows: anti-NRXN1 antibody was used (GTX54845, GeneTex, dilution, IF:1:30, IHC:1:30; Santa Cruz, sc136001, WB:1:100), anti-MAP 2 (Ab32454, Abcam, dilution IF: 1:500), anti-GFP (AF5066, Beyotime, dilution IF: 1:100), and anti-GAPDH (10494, Proteintech, dilution WB 1:1000). Other antibodies were as follows: Donkey polyclonal Secondary Antibody to Mouse IgG (Alexa Fluor594, ab150108, Abcam, dilution IF 1:1000), Donkey polyclonal Secondary Antibody to Rabbit IgG (Alexa Fluor488, ab150061, Abcam), HRP-conjugated AffiniPure Goat Anti-Mouse IgG(H+L) (SA00001-1, Proteintech, dilution WB:1:5000), and HRP-conjugated AffiniPure Goat Anti-Rabbit IgG(H+L) (SA00001-2, Proteintech, dilution WB:1:5000).
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7

Immunofluorescence protocol for dynein-associated proteins

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Cells were cultured on cover-slips for 4 d in serum-free medium, transfected with corresponding plasmid, and continuously cultured for another 48 hr in serum-free medium, then washed in PBS, fixed in 4% paraformaldehyde for 15 min, and permeabilized in 0.1% Triton/PBS for 10 min in a 4° icebox. After incubation with 5% BSA for 1 hr at room temperature, primary antibodies were added: DNAAF1 (sc-133762; Santa Cruz Biotechnology), DNAI2 (H00064446-M01; Abnova Corporation), and DNALI1 (ab87075; Abcam). Secondary antibodies used were goat anti-rabbit IgG H&L (Alexa Fluor 594) (ab150080; Abcam) and donkey anti-mouse IgG H&L (Alexa Fluor 594) (ab150108; Abcam). Nuclei were stained with DAPI (P36935; Life Technologies). Immunofluorescence microscopy was carried out using a Leica TCS SP8 confocal microscope.
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8

Hypothalamic Gene Expression in Mice

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Twenty-four mice (male, 8 weeks old) feeding on a standard chow diet were equally divided into eight groups (NC-0h, NC-1h, NC-2h, NC-3h; D3-0h, D3-1h, D3-2h, D3-3h). For gene expression assays, the hypothalamus was harvested 0–3 hours following D3 administration (NC: saline), and the expression levels of c-Fos, AgRp and Pomc were quantified by quantitative RT-PCR.
The same experiment was carried out for the immunofluorescence. c-Fos staining was performed as described in a previous study.66 (link) Briefly, mice were anaesthetised with a lethal dose of pentobarbital and transcardially perfused with PBS followed by 4% paraformaldehyde. Brains were removed, placed in 4% paraformaldehyde overnight and dehydrated in 30% sucrose for 1 week. Brains were cut into 25 mm sections. The sections were treated as described above and incubated overnight at room temperature in mouse anti-FOS (1:500; ab208942; Abcam) or rabbit anti-POMC (1:100; ab254257; Abcam). Detection and labelling were performed using secondary antibodies conjugated to Alexa Fluor-594 donkey anti-mouse IgG (H+L) (1/500, ab150108, Abcam) or Alexa Fluor-488 donkey anti-rabbit IgG (H+L) (1/500, ab150073, Abcam), and imaging was performed as described above. Images were pseudocoloured using Photoshop software (Adobe) or ImageJ (NIH).
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9

Multiplex Immunohistochemistry for Tissue Analysis

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The primary antibodies used in this study were as follows: F4/80 (rat monoclonal antibody; dilution, 1:200; ab6640; Abcam), inducible nitric oxide synthase (iNOS; rabbit polyclonal antibody; dilution, 1:100; ab15323; Abcam), TGF‐β1 (rabbit polyclonal antibody; dilution, 1:100; ab92486; Abcam), CD31 (rat monoclonal antibody; dilution, 1:100; cat. no. DIA‐310; Dianova), and alpha smooth muscle actin (α‐SMA; mouse monoclonal antibody; dilution, 1:500; ab7817; Abcam).
The secondary antibody used to detect F4/80 and CD31 immunoreactivity was Alexa Fluor 488‐conjugated donkey anti‐rat IgG (dilution, 1:500; ab150153; Abcam). The secondary antibody used to detect iNOS and TGF‐β1 immunoreactivity was Alexa Fluor 594‐conjugated donkey antirabbit IgG (dilution, 1:500; ab150064; Abcam). The secondary antibody used to detect α‐SMA immunoreactivity was Alexa Fluor 594‐conjugated donkey antimouse IgG (dilution, 1:500; ab150108; Abcam).
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10

Immunofluorescent Labeling of Tissue and Cells

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The immunofluorescent process of tissue or cells was done as previously described.40, 43 The detailed information of primary and secondary antibodies was shown as following: NF‐200 (1:10000, Abcam, ab4680), MBP (1:200, Abcam, ab40390), HO‐1 (1:100, Santa Cruz, sc‐1797), NQO1 (1:1000, Abcam, ab34173), S100 (1:200, Abcam, ab4066), Nrf‐2 (1:500, Abcam, ab62352), Alexa‐Fluor 488 donkey anti‐ rabbit IgG (1:1000, Abcam, ab150073), and Alexa‐Fluor 594 donkey anti‐mouse IgG (1:1000, Abcam, ab150108). Nuclei were labelled with 4′6‐Diamidino‐2‐phenylindole‐dihydrochloride (DAPI, C1006; Beyotime Institute of Biotechnology, Shanghai, China). All fluorescence images were obtained under the Nikon ECLIPSE 80i (Nikon, Tokyo, Japan).
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